Variant report

Variant	rs7180697
Chromosome Location	chr15:33571193-33571194
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:33525633..33527144-chr15:33569838..33571405,2	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11634210	0.85[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17235910	0.93[EUR][1000 genomes]
rs56257462	0.93[EUR][1000 genomes]
rs8029998	0.89[EUR][1000 genomes]
rs8030970	0.89[EUR][1000 genomes]
rs8031464	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv903982	chr15:33282844-33616150	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
2	nsv482299	chr15:33449137-33624122	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
3	nsv533346	chr15:33469439-33809641	Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
4	nsv832963	chr15:33514798-33712442	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
5	nsv518393	chr15:33564482-33576883	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33567600-33571200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:33568000-33571200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr15:33569400-33571200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr15:33569800-33572200	Enhancers	HUES48 Cell Line	embryonic stem cell
5	chr15:33570000-33571200	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr15:33570400-33571400	Enhancers	NHEK	skin
7	chr15:33570400-33572200	Enhancers	HUES64 Cell Line	embryonic stem cell
8	chr15:33570400-33572200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr15:33570600-33571400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:33570600-33571800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
11	chr15:33570600-33572400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr15:33570600-33572400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr15:33570600-33572400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
14	chr15:33570600-33572400	Enhancers	HMEC	breast
15	chr15:33570800-33572000	Enhancers	iPS-15b Cell Line	embryonic stem cell
16	chr15:33570800-33572200	Enhancers	ES-I3 Cell Line	embryonic stem cell
17	chr15:33570800-33572200	Enhancers	ES-WA7 Cell Line	embryonic stem cell
18	chr15:33570800-33572200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
19	chr15:33570800-33572400	Enhancers	Muscle Satellite Cultured Cells	--
20	chr15:33571000-33571600	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr15:33571000-33571800	Enhancers	NHDF-Ad	bronchial
22	chr15:33571000-33572200	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr15:33571000-33572200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr15:33571000-33572200	Flanking Active TSS	A549	lung
25	chr15:33571000-33572200	Enhancers	HUVEC	blood vessel
26	chr15:33571000-33572400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
27	chr15:33571000-33572400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
28	chr15:33571000-33572400	Enhancers	Placenta Amnion	Placenta Amnion
29	chr15:33571000-33572400	Enhancers	NH-A	brain
30	chr15:33571000-33572400	Enhancers	Osteobl	bone

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links