Variant report

Variant	rs7180928
Chromosome Location	chr15:78707148-78707149
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs7170281	0.91[EUR][1000 genomes]
rs7182596	0.98[AFR][1000 genomes];0.93[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv529491	chr15:77932659-78751516	Genic enhancers Bivalent Enhancer Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	80 gene(s)	inside rSNPs	diseases
2	nsv917303	chr15:78491050-79205255	Enhancers Genic enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	122 gene(s)	inside rSNPs	diseases
3	nsv833063	chr15:78605215-78754945	Weak transcription Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv1627	chr15:78683761-78728604	Enhancers Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS Strong transcription Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:78698200-78729800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr15:78700800-78722000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr15:78704400-78709800	Weak transcription	Hela-S3	cervix
4	chr15:78706400-78707200	Enhancers	Fetal Muscle Trunk	muscle
5	chr15:78706400-78711800	Enhancers	Duodenum Mucosa	Duodenum
6	chr15:78706400-78712400	Enhancers	Rectal Mucosa Donor 31	rectum
7	chr15:78706600-78707800	Enhancers	Brain Germinal Matrix	brain
8	chr15:78706800-78707200	Enhancers	Rectal Mucosa Donor 29	rectum
9	chr15:78706800-78708000	Enhancers	Cortex derived primary cultured neurospheres	brain
10	chr15:78706800-78708200	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr15:78706800-78708400	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr15:78707000-78707400	Bivalent Enhancer	Brain Cingulate Gyrus	brain
13	chr15:78707000-78707400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr15:78707000-78707400	Enhancers	Sigmoid Colon	Sigmoid Colon
15	chr15:78707000-78708000	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr15:78707000-78708200	Enhancers	HUES6 Cell Line	embryonic stem cell
17	chr15:78707000-78708200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
18	chr15:78707000-78711800	Enhancers	Fetal Intestine Large	intestine
19	chr15:78707000-78712200	Enhancers	Fetal Intestine Small	intestine

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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