Variant report

Variant	rs7181586
Chromosome Location	chr15:57995734-57995735
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	FOS	chr15:57995627-57995779	MCF10A-Er-Src	breast:	n/a	n/a
2	RCOR1	chr15:57995717-57995969	K562	blood:	n/a	n/a
3	NFYB	chr15:57995553-57995751	Hela-S3	cervix:	n/a	n/a
4	FOS	chr15:57995579-57995761	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:57993857..57997127-chr15:58010020..58013410,3	K562	blood:

Variant related genes	Relation type
POLR2M	TF binding region
ENSG00000261219	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1000697	1.00[CHB][hapmap];0.92[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs1062707	1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.96[ASN][1000 genomes]
rs11638075	0.95[ASN][1000 genomes]
rs16977644	1.00[CHB][hapmap];0.84[CHD][hapmap];0.95[JPT][hapmap];0.94[ASN][1000 genomes]
rs1808478	0.83[CHB][hapmap]
rs2470361	1.00[CHB][hapmap];0.90[CHD][hapmap];0.95[JPT][hapmap];0.95[ASN][1000 genomes]
rs2733616	0.96[ASN][1000 genomes]
rs2733617	1.00[CHB][hapmap];0.92[CHD][hapmap];0.92[ASN][1000 genomes]
rs2733619	1.00[CHB][hapmap];0.87[CHD][hapmap];0.95[JPT][hapmap];0.92[ASN][1000 genomes]
rs28489309	0.81[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57986545	0.98[ASN][1000 genomes]
rs7178647	0.85[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs72745574	0.98[ASN][1000 genomes]
rs72745581	0.94[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045611	chr15:57350965-58070807	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
2	nsv530682	chr15:57912502-58108285	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1038667	chr15:57933076-58481870	Flanking Active TSS Enhancers Genic enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
4	nsv542400	chr15:57933076-58481870	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Strong transcription Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7181586	FAM81A	cis	cerebellum	SCAN

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:57979200-57998200	Weak transcription	Fetal Intestine Small	intestine
2	chr15:57983600-57998200	Weak transcription	Adipose Nuclei	Adipose
3	chr15:57983800-57998400	Weak transcription	Right Ventricle	heart
4	chr15:57987400-57998200	Weak transcription	Muscle Satellite Cultured Cells	--
5	chr15:57987800-57995800	Weak transcription	Fetal Heart	heart
6	chr15:57989600-57998200	Weak transcription	Left Ventricle	heart
7	chr15:57990200-57998400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr15:57994600-57996400	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
9	chr15:57994800-57996200	Enhancers	Hela-S3	cervix
10	chr15:57994800-57996200	Enhancers	HMEC	breast
11	chr15:57994800-57998000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
12	chr15:57994800-57998200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
13	chr15:57994800-57998200	Enhancers	Primary T helper cells PMA-I stimulated	--
14	chr15:57995000-57995800	Flanking Active TSS	Primary T helper naive cells from peripheral blood	blood
15	chr15:57995000-57996200	Enhancers	HSMM	muscle
16	chr15:57995000-57996200	Enhancers	NHEK	skin
17	chr15:57995000-57996600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
18	chr15:57995000-57997000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr15:57995000-57997000	Enhancers	Primary T killer memory cells from peripheral blood	blood
20	chr15:57995000-57997000	Enhancers	Dnd41	blood
21	chr15:57995000-57998000	Enhancers	Primary T helper cells fromperipheralblood	blood
22	chr15:57995200-57995800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr15:57995200-57996800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
24	chr15:57995400-57996200	Flanking Active TSS	Primary T cells from cord blood	blood
25	chr15:57995400-57996200	Enhancers	Placenta Amnion	Placenta Amnion
26	chr15:57995600-57995800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:57995600-57996600	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr15:57995600-57998200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
29	chr15:57995600-57998200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr15:57995600-57998400	Weak transcription	HSMMtube	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links