Variant report

Variant	rs7181675
Chromosome Location	chr15:60149596-60149597
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs17237089	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs57736295	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904280	chr15:60042722-60524025	Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:60149200-60149800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr15:60149200-60149800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr15:60149200-60149800	Enhancers	NHEK	skin
4	chr15:60149200-60150000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
5	chr15:60149400-60149800	Enhancers	Cortex derived primary cultured neurospheres	brain
6	chr15:60149400-60149800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
7	chr15:60149400-60150000	Enhancers	HMEC	breast

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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