Variant report

Variant	rs7181866
Chromosome Location	chr15:50610792-50610793
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr15:50610712..50612973-chr15:50619651..50621682,2	MCF-7	breast:
2	chr15:50610363..50615933-chr15:50616213..50621203,5	MCF-7	breast:
3	chr15:50607842..50610814-chr15:50645214..50647850,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000104064	Chromatin interaction
ENSG00000244879	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs12438041	0.83[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12438692	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs12438726	0.88[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12440811	0.93[JPT][hapmap]
rs12441687	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.88[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12591072	0.88[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12591371	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[YRI][hapmap];0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12595772	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16963635	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs58035812	0.90[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61086221	0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7167333	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7174329	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8031031	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8552	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044277	chr15:49921547-50702386	Enhancers Active TSS Weak transcription Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542380	chr15:49921547-50702386	Enhancers Strong transcription Weak transcription Genic enhancers Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv1045456	chr15:50592472-51019873	Strong transcription Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	121 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:51 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:50580800-50638400	Weak transcription	NHEK	skin
2	chr15:50596400-50623400	Weak transcription	Aorta	Aorta
3	chr15:50596800-50611400	Weak transcription	Right Atrium	heart
4	chr15:50597000-50628600	Weak transcription	Fetal Stomach	stomach
5	chr15:50600800-50610800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr15:50600800-50610800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
7	chr15:50600800-50612800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
8	chr15:50600800-50613600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr15:50600800-50617200	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr15:50600800-50618600	Weak transcription	Fetal Intestine Large	intestine
11	chr15:50600800-50623200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr15:50600800-50629400	Weak transcription	Placenta	Placenta
13	chr15:50600800-50631200	Weak transcription	Left Ventricle	heart
14	chr15:50600800-50635400	Weak transcription	HepG2	liver
15	chr15:50600800-50641400	Weak transcription	HSMM	muscle
16	chr15:50600800-50641600	Weak transcription	Fetal Kidney	kidney
17	chr15:50600800-50643000	Weak transcription	Fetal Thymus	thymus
18	chr15:50600800-50643400	Weak transcription	Fetal Muscle Leg	muscle
19	chr15:50600800-50644200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr15:50600800-50644600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
21	chr15:50601000-50610800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr15:50601000-50614400	Weak transcription	Psoas Muscle	Psoas
23	chr15:50601000-50622800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
24	chr15:50601000-50627200	Weak transcription	Monocytes-CD14+_RO01746	blood
25	chr15:50601000-50630400	Weak transcription	Primary B cells from peripheral blood	blood
26	chr15:50601000-50637000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
27	chr15:50601000-50638400	Weak transcription	HUVEC	blood vessel
28	chr15:50601400-50642800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
29	chr15:50601600-50610800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr15:50602200-50610800	Weak transcription	Primary T helper cells PMA-I stimulated	--
31	chr15:50602200-50621000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
32	chr15:50602200-50625600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
33	chr15:50605800-50610800	Weak transcription	GM12878-XiMat	blood
34	chr15:50608600-50623200	Weak transcription	A549	lung
35	chr15:50608800-50615600	Weak transcription	Duodenum Mucosa	Duodenum
36	chr15:50608800-50642800	Weak transcription	Hela-S3	cervix
37	chr15:50610200-50610800	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
38	chr15:50610200-50611000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
39	chr15:50610200-50611400	Enhancers	Primary T cells from cord blood	blood
40	chr15:50610400-50611000	Genic enhancers	Primary B cells from cord blood	blood
41	chr15:50610400-50611000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
42	chr15:50610400-50611200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr15:50610400-50611200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr15:50610400-50611200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
45	chr15:50610400-50611400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
46	chr15:50610400-50611600	Enhancers	Primary hematopoietic stem cells	blood
47	chr15:50610400-50611600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
48	chr15:50610400-50611600	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr15:50610400-50611800	Enhancers	Primary hematopoietic stem cells short term culture	blood
50	chr15:50610600-50611000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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