Variant report

Variant	rs7182893
Chromosome Location	chr15:33243929-33243930
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10048025	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs10519763	0.82[CHB][hapmap]
rs10519766	0.82[CHB][hapmap]
rs1122090	0.82[CHB][hapmap]
rs11633193	0.88[CEU][hapmap];0.89[EUR][1000 genomes]
rs11852876	0.91[CHB][hapmap]
rs11855526	0.82[CHB][hapmap]
rs12912842	0.82[CHB][hapmap]
rs12916094	0.85[CEU][hapmap];0.92[CHB][hapmap];0.92[JPT][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs16960803	0.82[CHB][hapmap]
rs16960807	0.82[CHB][hapmap]
rs16961044	0.83[CHB][hapmap]
rs16961611	0.91[CHB][hapmap]
rs2034478	0.82[CHB][hapmap]
rs2034479	0.83[CHB][hapmap]
rs2339165	0.82[CHB][hapmap]
rs28648586	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs28778081	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs3812936	0.91[CHB][hapmap]
rs3829481	0.82[CHB][hapmap]
rs41473744	0.91[CHB][hapmap]
rs6494794	0.85[CEU][hapmap];0.89[EUR][1000 genomes]
rs7163428	0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs8026200	0.82[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv456785	chr15:32926076-33352989	Genic enhancers Active TSS Weak transcription Bivalent Enhancer Enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
2	nsv568913	chr15:32926076-33352989	Weak transcription Bivalent Enhancer Enhancers Flanking Active TSS Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
3	nsv903978	chr15:33144202-33308641	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
4	nsv903979	chr15:33144202-33550256	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
5	nsv1041609	chr15:33148035-33355999	Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv542339	chr15:33148035-33355999	Weak transcription Enhancers Genic enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv903980	chr15:33149087-33264201	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
8	nsv1052966	chr15:33149753-33541951	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv542340	chr15:33149753-33541951	Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
10	nsv568917	chr15:33167171-33304172	Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
11	nsv903981	chr15:33207082-33550256	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:33226600-33245400	Weak transcription	Stomach Mucosa	stomach
2	chr15:33232800-33263400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr15:33234400-33248600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr15:33235000-33248200	Weak transcription	Aorta	Aorta
5	chr15:33236400-33244000	Weak transcription	Osteobl	bone
6	chr15:33238200-33245000	Weak transcription	NHLF	lung
7	chr15:33238200-33259600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr15:33242000-33244400	Weak transcription	Fetal Kidney	kidney
9	chr15:33242600-33244000	Genic enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
10	chr15:33242800-33245200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr15:33243600-33244400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr15:33243600-33246200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr15:33243600-33246600	Enhancers	Fetal Stomach	stomach
14	chr15:33243600-33247000	Enhancers	NHDF-Ad	bronchial
15	chr15:33243600-33247800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr15:33243800-33245200	Enhancers	iPS-15b Cell Line	embryonic stem cell
17	chr15:33243800-33258800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr15:33243800-33264400	Weak transcription	Gastric	stomach

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