Variant report

Variant	rs7183404
Chromosome Location	chr15:59157634-59157635
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	RAD21	chr15:59156863-59157644	H1-hESC	embryonic stem cell:	n/a	n/a
2	POLR2A	chr15:59156745-59158918	NB4	blood:	n/a	n/a
3	POLR2A	chr15:59156453-59158833	HepG2	liver:	n/a	n/a
4	CHD2	chr15:59156789-59158056	HepG2	liver:	n/a	n/a
5	E2F6	chr15:59156797-59157785	H1-hESC	embryonic stem cell:	n/a	n/a
6	BHLHE40	chr15:59156764-59157975	HepG2	liver:	n/a	n/a
7	MAX	chr15:59156384-59158233	HepG2	liver:	n/a	chr15:59157169-59157178
8	MXI1	chr15:59156672-59158015	HepG2	liver:	n/a	n/a
9	MAX	chr15:59156808-59157864	H1-hESC	embryonic stem cell:	n/a	chr15:59157169-59157178
10	MAX	chr15:59156674-59157911	HepG2	liver:	n/a	chr15:59157169-59157178
11	POLR2A	chr15:59157628-59157649	MCF-7	breast:	n/a	n/a
12	POLR2A	chr15:59157509-59158098	HepG2	liver:	n/a	n/a
13	POLR2A	chr15:59156646-59158082	HepG2	liver:	n/a	n/a
14	MAX	chr15:59156508-59158172	NB4	blood:	n/a	chr15:59157169-59157178
15	E2F6	chr15:59156775-59157837	H1-hESC	embryonic stem cell:	n/a	n/a
16	HEY1	chr15:59157531-59158131	HepG2	liver:	n/a	n/a
17	POLR2A	chr15:59156720-59158117	HepG2	liver:	n/a	n/a
18	YY1	chr15:59156788-59157679	HepG2	liver:	n/a	chr15:59157176-59157190 chr15:59157524-59157535
19	POLR2A	chr15:59156716-59158766	HepG2	liver:	n/a	n/a
20	MYC	chr15:59156638-59158881	NB4	blood:	n/a	chr15:59157169-59157178
21	MYBL2	chr15:59156663-59157751	HepG2	liver:	n/a	n/a
22	POLR2A	chr15:59156828-59157885	H1-hESC	embryonic stem cell:	n/a	n/a
23	POLR2A	chr15:59156718-59157635	H1-hESC	embryonic stem cell:	n/a	n/a
24	POLR2A	chr15:59156643-59158751	HepG2	liver:	n/a	n/a
25	TAF1	chr15:59156790-59157645	HepG2	liver:	n/a	n/a
26	CHD2	chr15:59157172-59157651	H1-hESC	embryonic stem cell:	n/a	n/a
27	POLR2A	chr15:59157629-59158133	HepG2	liver:	n/a	n/a
28	HEY1	chr15:59156646-59158153	HepG2	liver:	n/a	chr15:59157174-59157189
29	MAX	chr15:59156592-59158157	HepG2	liver:	n/a	chr15:59157169-59157178
30	POLR2A	chr15:59156652-59158138	HepG2	liver:	n/a	n/a
31	MAX	chr15:59156706-59157802	H1-hESC	embryonic stem cell:	n/a	chr15:59157169-59157178

Variant related genes	Relation type
ENSG00000259353	TF binding region
ENSG00000242747	TF binding region

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11857223	1.00[CEU][hapmap];1.00[CHB][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs16940919	1.00[CEU][hapmap]
rs16953404	1.00[CEU][hapmap]
rs2124203	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6494045	1.00[CEU][hapmap];1.00[CHB][hapmap];0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv34110	chr15:58949991-59381634	Weak transcription Bivalent Enhancer Strong transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	esv1826703	chr15:59005922-59213678	Flanking Active TSS Enhancers Strong transcription Weak transcription Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	44 gene(s)	inside rSNPs	diseases
3	esv1798487	chr15:59027139-59213678	Strong transcription Weak transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	42 gene(s)	inside rSNPs	diseases
4	nsv527307	chr15:59103328-60018487	Enhancers Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	145 gene(s)	inside rSNPs	diseases
5	nsv1035640	chr15:59105360-59190930	Enhancers Strong transcription Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	diseases
6	nsv904270	chr15:59140329-59238415	Genic enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	48 gene(s)	inside rSNPs	diseases
7	nsv977720	chr15:59157444-59165373	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:59067000-59157800	Weak transcription	Hela-S3	cervix
2	chr15:59111800-59159600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr15:59120000-59169000	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr15:59145000-59166600	Weak transcription	HSMMtube	muscle
5	chr15:59147200-59169000	Weak transcription	K562	blood
6	chr15:59147600-59174600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
7	chr15:59148000-59168600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr15:59148000-59169000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
9	chr15:59151200-59165400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
10	chr15:59154600-59170200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
11	chr15:59156600-59157800	Flanking Active TSS	Brain Anterior Caudate	brain
12	chr15:59156600-59158000	Active TSS	ES-WA7 Cell Line	embryonic stem cell
13	chr15:59156600-59158200	Active TSS	Duodenum Mucosa	Duodenum
14	chr15:59156600-59158200	Active TSS	Pancreatic Islets	Pancreatic Islet
15	chr15:59156800-59157800	Flanking Bivalent TSS/Enh	H1 Cell Line	embryonic stem cell
16	chr15:59156800-59157800	Bivalent Enhancer	Primary T cells fromperipheralblood	blood
17	chr15:59156800-59157800	Enhancers	Spleen	Spleen
18	chr15:59156800-59158000	Active TSS	Colon Smooth Muscle	Colon
19	chr15:59156800-59158000	Enhancers	Lung	lung
20	chr15:59156800-59158000	Flanking Active TSS	Pancreas	Pancrea
21	chr15:59156800-59158400	Active TSS	Fetal Intestine Large	intestine
22	chr15:59156800-59158600	Active TSS	HepG2	liver
23	chr15:59157000-59157800	Bivalent/Poised TSS	iPS-20b Cell Line	embryonic stem cell
24	chr15:59157000-59157800	Active TSS	Primary B cells from cord blood	blood
25	chr15:59157000-59157800	Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr15:59157000-59157800	Flanking Bivalent TSS/Enh	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr15:59157000-59157800	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr15:59157000-59157800	Active TSS	Brain Inferior Temporal Lobe	brain
29	chr15:59157000-59157800	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
30	chr15:59157000-59157800	Active TSS	Brain Substantia Nigra	brain
31	chr15:59157000-59157800	Flanking Bivalent TSS/Enh	Monocytes-CD14+_RO01746	blood
32	chr15:59157000-59158000	Flanking Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
33	chr15:59157000-59158000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
34	chr15:59157000-59158000	Flanking Active TSS	Adipose Nuclei	Adipose
35	chr15:59157000-59158000	Active TSS	Rectal Smooth Muscle	rectum
36	chr15:59157000-59158000	Flanking Active TSS	Right Ventricle	heart
37	chr15:59157000-59158200	Active TSS	iPS-15b Cell Line	embryonic stem cell
38	chr15:59157000-59158200	Active TSS	Duodenum Smooth Muscle	Duodenum
39	chr15:59157200-59157800	Active TSS	HUES64 Cell Line	embryonic stem cell
40	chr15:59157200-59157800	Flanking Active TSS	ES-UCSF4 Cell Line	embryonic stem cell
41	chr15:59157200-59157800	Enhancers	Primary B cells from peripheral blood	blood
42	chr15:59157200-59157800	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
43	chr15:59157200-59157800	Active TSS	Fetal Adrenal Gland	Adrenal Gland
44	chr15:59157200-59157800	Active TSS	Rectal Mucosa Donor 29	rectum
45	chr15:59157200-59158000	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
46	chr15:59157200-59158000	Active TSS	Liver	Liver
47	chr15:59157200-59158000	Active TSS	Brain Hippocampus Middle	brain
48	chr15:59157200-59158000	Flanking Active TSS	Gastric	stomach
49	chr15:59157200-59158200	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
50	chr15:59157200-59158400	Active TSS	Fetal Intestine Small	intestine

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