Variant report

Variant	rs7185787
Chromosome Location	chr16:47113547-47113548
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 28 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1592541	1.00[AMR][1000 genomes]
rs16952122	1.00[AMR][1000 genomes]
rs16952155	1.00[AMR][1000 genomes]
rs16952500	1.00[AMR][1000 genomes]
rs16952585	1.00[AMR][1000 genomes]
rs16953792	1.00[AMR][1000 genomes]
rs16953990	1.00[AMR][1000 genomes]
rs16954079	1.00[AMR][1000 genomes]
rs16955741	1.00[AMR][1000 genomes]
rs2078255	1.00[AMR][1000 genomes]
rs2231979	1.00[AMR][1000 genomes]
rs2231983	1.00[AMR][1000 genomes]
rs7193342	1.00[AMR][1000 genomes]
rs7194502	1.00[AMR][1000 genomes]
rs7194880	1.00[AMR][1000 genomes]
rs7202448	1.00[AMR][1000 genomes]
rs7205285	1.00[AMR][1000 genomes]
rs7205849	1.00[AMR][1000 genomes]
rs7500933	1.00[AMR][1000 genomes]
rs8055204	1.00[AMR][1000 genomes]
rs8058408	1.00[AMR][1000 genomes]
rs9745409	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1059456	chr16:46463770-47307580	Flanking Active TSS Bivalent/Poised TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
2	nsv1066115	chr16:46463770-47318415	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	65 gene(s)	inside rSNPs	diseases
3	nsv1056328	chr16:47011193-47172862	Weak transcription Flanking Active TSS Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
4	esv1798659	chr16:47083332-47234379	Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Active TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	esv1823679	chr16:47089357-47194051	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
6	esv1795199	chr16:47111119-47732476	Weak transcription Strong transcription ZNF genes & repeats Flanking Active TSS Enhancers Bivalent/Poised TSS Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:47103800-47116800	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr16:47107400-47138400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr16:47108000-47145600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr16:47108200-47113800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
5	chr16:47108200-47114000	Weak transcription	Fetal Brain Female	brain
6	chr16:47108200-47116600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr16:47108200-47116800	Weak transcription	GM12878-XiMat	blood
8	chr16:47108200-47130000	Weak transcription	Brain Germinal Matrix	brain
9	chr16:47110800-47113600	Weak transcription	H1 Cell Line	embryonic stem cell
10	chr16:47110800-47122200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr16:47110800-47158000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
12	chr16:47111000-47113600	Weak transcription	HUES48 Cell Line	embryonic stem cell
13	chr16:47111000-47131000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
14	chr16:47111200-47113600	Weak transcription	HUES64 Cell Line	embryonic stem cell
15	chr16:47111200-47113600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
16	chr16:47111800-47113600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr16:47112000-47132000	Weak transcription	Esophagus	oesophagus
18	chr16:47112000-47144800	Weak transcription	Spleen	Spleen
19	chr16:47112600-47114600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr16:47112600-47116600	Weak transcription	Monocytes-CD14+_RO01746	blood
21	chr16:47112800-47115000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr16:47112800-47115400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr16:47113200-47113600	Weak transcription	Fetal Brain Male	brain
24	chr16:47113200-47115600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr16:47113200-47142200	Weak transcription	Hela-S3	cervix
26	chr16:47113400-47141000	Weak transcription	NH-A	brain

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