Variant report

Variant	rs7186453
Chromosome Location	chr16:58786342-58786343
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs11643711	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs11644269	0.89[ASN][1000 genomes]
rs11859128	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs12709011	0.85[ASN][1000 genomes]
rs12919151	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12925419	0.90[ASN][1000 genomes]
rs12925537	0.90[ASN][1000 genomes]
rs12931903	0.88[ASN][1000 genomes]
rs1898234	0.85[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2013333	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs28579863	0.87[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs34295929	0.89[ASN][1000 genomes]
rs4784054	0.89[ASN][1000 genomes]
rs4784980	0.85[ASN][1000 genomes]
rs6499977	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6499978	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs73553527	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8044439	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8044904	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8045828	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8046937	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8047097	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8047394	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8052646	0.80[AMR][1000 genomes];0.90[ASN][1000 genomes]
rs8052824	0.80[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs8054775	0.80[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs8059778	0.91[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9937890	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758427	chr16:58579005-58876037	Enhancers Strong transcription Genic enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
2	esv2758650	chr16:58579005-58876037	ZNF genes & repeats Active TSS Weak transcription Strong transcription Enhancers Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	22 gene(s)	inside rSNPs	diseases
3	nsv1065296	chr16:58738198-58837859	Flanking Active TSS Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	11 gene(s)	inside rSNPs	n/a
4	nsv1065269	chr16:58743487-58972224	Flanking Active TSS Enhancers Strong transcription Active TSS Weak transcription ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:58776600-58790000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:58784200-58790200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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