Variant report

Variant	rs7187719
Chromosome Location	chr16:70356913-70356914
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11861246	0.84[AFR][1000 genomes]
rs11865368	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11865863	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs11866628	1.00[AMR][1000 genomes]
rs11867150	1.00[YRI][hapmap];0.84[AFR][1000 genomes]
rs16970135	0.89[AFR][1000 genomes]
rs16970154	0.91[YRI][hapmap]
rs16970191	0.91[YRI][hapmap]
rs17878832	1.00[AMR][1000 genomes]
rs17879608	1.00[AMR][1000 genomes]
rs17880242	1.00[AMR][1000 genomes]
rs17880392	1.00[AMR][1000 genomes]
rs17882800	1.00[AMR][1000 genomes]
rs17883309	1.00[AMR][1000 genomes]
rs17885493	1.00[AMR][1000 genomes]
rs4999489	1.00[AMR][1000 genomes]
rs6499313	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6499315	1.00[AMR][1000 genomes]
rs6499316	0.91[YRI][hapmap];1.00[AMR][1000 genomes]
rs6499319	1.00[AMR][1000 genomes]
rs7193168	0.87[AFR][1000 genomes]
rs7196295	1.00[AMR][1000 genomes]
rs8044110	1.00[AMR][1000 genomes]
rs8044956	1.00[AMR][1000 genomes]
rs8058032	1.00[AMR][1000 genomes]
rs8062097	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs8064090	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv906871	chr16:70302333-70375873	Flanking Active TSS ZNF genes & repeats Weak transcription Strong transcription Active TSS Enhancers Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv482577	chr16:70329048-70516069	Strong transcription Weak transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	48 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70333800-70367800	Weak transcription	Small Intestine	intestine
2	chr16:70334000-70368400	Weak transcription	Fetal Heart	heart
3	chr16:70334200-70379800	Weak transcription	Stomach Mucosa	stomach
4	chr16:70335800-70366400	Weak transcription	Psoas Muscle	Psoas
5	chr16:70335800-70374200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr16:70339000-70366400	Weak transcription	K562	blood
7	chr16:70339200-70367600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr16:70339400-70359000	Weak transcription	HUVEC	blood vessel
9	chr16:70339400-70365000	Weak transcription	A549	lung
10	chr16:70339400-70367400	Weak transcription	HMEC	breast
11	chr16:70342200-70357600	Weak transcription	NHLF	lung
12	chr16:70345600-70366600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr16:70346200-70367600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr16:70346200-70376000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr16:70346400-70369600	Strong transcription	Primary monocytes fromperipheralblood	blood
16	chr16:70346600-70360400	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr16:70347400-70371000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr16:70348200-70367800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr16:70348200-70371000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
20	chr16:70348400-70371000	Strong transcription	Breast Myoepithelial Primary Cells	Breast
21	chr16:70348800-70359600	Strong transcription	Primary T helper cells PMA-I stimulated	--
22	chr16:70348800-70360400	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
23	chr16:70348800-70360400	Strong transcription	Duodenum Mucosa	Duodenum
24	chr16:70348800-70361200	Strong transcription	Primary neutrophils fromperipheralblood	blood
25	chr16:70348800-70361800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr16:70348800-70365200	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
27	chr16:70348800-70370600	Strong transcription	Primary T helper cells fromperipheralblood	blood
28	chr16:70348800-70371000	Strong transcription	Liver	Liver
29	chr16:70349000-70358600	Strong transcription	Fetal Intestine Small	intestine
30	chr16:70349200-70361200	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr16:70349200-70362400	Strong transcription	HUES64 Cell Line	embryonic stem cell
32	chr16:70349400-70357800	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
33	chr16:70349400-70360000	Strong transcription	HUES48 Cell Line	embryonic stem cell
34	chr16:70349400-70360600	Strong transcription	Rectal Mucosa Donor 29	rectum
35	chr16:70349400-70362200	Strong transcription	Adipose Nuclei	Adipose
36	chr16:70349400-70362400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
37	chr16:70349400-70369400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
38	chr16:70349400-70370600	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr16:70349400-70371200	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr16:70349400-70372000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr16:70349600-70357600	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
42	chr16:70349600-70379800	Weak transcription	Fetal Brain Male	brain
43	chr16:70349800-70360000	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
44	chr16:70349800-70360000	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr16:70349800-70360000	Strong transcription	Thymus	Thymus
46	chr16:70349800-70360200	Strong transcription	Stomach Smooth Muscle	stomach
47	chr16:70349800-70367600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
48	chr16:70349800-70370400	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
49	chr16:70349800-70372600	Strong transcription	Fetal Muscle Trunk	muscle
50	chr16:70349800-70373200	Strong transcription	Fetal Stomach	stomach

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