Variant report

Variant	rs7189174
Chromosome Location	chr16:82768981-82768982
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82762397..82764526-chr16:82767820..82769912,2	MCF-7	breast:

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12716952	1.00[CHB][hapmap];0.87[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12928133	1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs12929312	0.87[ASN][1000 genomes]
rs12932668	1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs1381508	0.83[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs1381509	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1381510	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1462038	0.85[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16958414	0.80[CEU][hapmap];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16958474	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs1870847	1.00[JPT][hapmap];0.91[ASN][1000 genomes]
rs35385909	0.92[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35764641	0.98[ASN][1000 genomes]
rs6565063	1.00[CHB][hapmap];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
2	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
4	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
5	nsv1059718	chr16:82564054-82810003	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
6	nsv573379	chr16:82713551-82887631	Strong transcription Enhancers Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	3 gene(s)	inside rSNPs	diseases
7	esv2751616	chr16:82714696-82852296	Weak transcription Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1067216	chr16:82719694-82821762	Enhancers Weak transcription Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
9	nsv543000	chr16:82719694-82821762	Weak transcription Enhancers Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	1 gene(s)	inside rSNPs	diseases
10	nsv1064438	chr16:82762729-82788901	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
11	nsv907026	chr16:82765607-82812853	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82750200-82780600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
2	chr16:82762000-82773800	Weak transcription	NHEK	skin
3	chr16:82766000-82769000	Enhancers	Fetal Heart	heart
4	chr16:82766600-82770600	Enhancers	Aorta	Aorta
5	chr16:82766600-82770600	Enhancers	Left Ventricle	heart
6	chr16:82766800-82769200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
7	chr16:82766800-82788600	Weak transcription	HMEC	breast
8	chr16:82767400-82770800	Enhancers	Fetal Brain Male	brain
9	chr16:82767600-82769400	Enhancers	Right Atrium	heart
10	chr16:82767600-82771000	Enhancers	Fetal Muscle Leg	muscle
11	chr16:82767800-82769200	Enhancers	Adipose Nuclei	Adipose
12	chr16:82767800-82769600	Enhancers	Right Ventricle	heart
13	chr16:82767800-82771000	Enhancers	Fetal Stomach	stomach
14	chr16:82768000-82769000	Enhancers	GM12878-XiMat	blood
15	chr16:82768000-82771200	Enhancers	Brain Germinal Matrix	brain
16	chr16:82768200-82770200	Enhancers	Fetal Brain Female	brain
17	chr16:82768200-82771000	Enhancers	HSMMtube	muscle
18	chr16:82768400-82769000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr16:82768400-82769400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr16:82768400-82769800	Enhancers	Brain Inferior Temporal Lobe	brain
21	chr16:82768400-82771000	Enhancers	Colon Smooth Muscle	Colon
22	chr16:82768600-82769200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
23	chr16:82768600-82769400	Enhancers	Brain Hippocampus Middle	brain
24	chr16:82768600-82769800	Enhancers	Fetal Adrenal Gland	Adrenal Gland
25	chr16:82768600-82769800	Enhancers	HSMM	muscle
26	chr16:82768600-82770000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
27	chr16:82768600-82770000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
28	chr16:82768600-82770200	Enhancers	NHDF-Ad	bronchial
29	chr16:82768600-82770400	Weak transcription	Psoas Muscle	Psoas
30	chr16:82768600-82770800	Enhancers	Rectal Smooth Muscle	rectum
31	chr16:82768600-82773400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
32	chr16:82768600-82775800	Weak transcription	Fetal Muscle Trunk	muscle
33	chr16:82768600-82784800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr16:82768800-82769000	Enhancers	NH-A	brain
35	chr16:82768800-82769200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
36	chr16:82768800-82769200	Enhancers	Skeletal Muscle Male	skeletal muscle
37	chr16:82768800-82769200	Enhancers	Osteobl	bone
38	chr16:82768800-82769400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
39	chr16:82768800-82769600	Enhancers	Brain Angular Gyrus	brain
40	chr16:82768800-82769600	Enhancers	Brain Substantia Nigra	brain
41	chr16:82768800-82770600	Enhancers	Duodenum Smooth Muscle	Duodenum
42	chr16:82768800-82770600	Flanking Active TSS	Stomach Smooth Muscle	stomach

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