Variant report

Variant	rs7190667
Chromosome Location	chr16:70668972-70668973
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs7201073	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv517391	chr16:70666410-70840490	Weak transcription Active TSS Strong transcription Enhancers Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
2	nsv457517	chr16:70666722-70840490	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases
3	nsv572945	chr16:70666722-70840490	Weak transcription Genic enhancers Flanking Active TSS Enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	30 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70647400-70669200	Weak transcription	Right Atrium	heart
2	chr16:70661200-70669000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr16:70663000-70669000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr16:70665200-70669000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
5	chr16:70665400-70669200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr16:70665400-70669200	Weak transcription	Fetal Intestine Small	intestine
7	chr16:70666000-70669000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr16:70666000-70679000	Weak transcription	Spleen	Spleen
9	chr16:70666200-70669200	Weak transcription	Ovary	ovary
10	chr16:70666600-70669000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
11	chr16:70666600-70669000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
12	chr16:70666600-70669400	Enhancers	HepG2	liver
13	chr16:70668600-70669200	Enhancers	Muscle Satellite Cultured Cells	--
14	chr16:70668600-70669200	Enhancers	HUVEC	blood vessel
15	chr16:70668600-70669200	Enhancers	NH-A	brain
16	chr16:70668600-70669200	Enhancers	NHDF-Ad	bronchial
17	chr16:70668600-70669200	Enhancers	Osteobl	bone
18	chr16:70668600-70669600	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr16:70668600-70669600	Enhancers	NHLF	lung
20	chr16:70668600-70670400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr16:70668600-70670800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr16:70668600-70670800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr16:70668800-70669200	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
24	chr16:70668800-70669200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr16:70668800-70669400	Enhancers	HUES6 Cell Line	embryonic stem cell
26	chr16:70668800-70669400	Enhancers	iPS-15b Cell Line	embryonic stem cell
27	chr16:70668800-70669400	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
28	chr16:70668800-70669600	Enhancers	ES-I3 Cell Line	embryonic stem cell
29	chr16:70668800-70669600	Enhancers	HUES48 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links