Variant report

Variant	rs7192110
Chromosome Location	chr16:65160168-65160169
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	TCF12	chr16:65159579-65160281	SK-N-SH	brain:	n/a	n/a
2	POLR2A	chr16:65159613-65160248	SK-N-MC	brain:	n/a	n/a
3	CEBPB	chr16:65159869-65160196	HepG2	liver:	n/a	chr16:65160022-65160033 chr16:65160020-65160037 chr16:65160021-65160034
4	POLR2A	chr16:65159694-65160220	SK-N-MC	brain:	n/a	n/a
5	CEBPB	chr16:65159839-65160224	IMR90	lung:	n/a	chr16:65160022-65160033 chr16:65160020-65160037 chr16:65160021-65160034
6	CEBPB	chr16:65159888-65160205	A549	lung:	n/a	chr16:65160022-65160033 chr16:65160020-65160037 chr16:65160021-65160034

Variant related genes	Relation type
CDH11	TF binding region

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs10500511	0.87[ASN][1000 genomes]
rs1423782	0.86[JPT][hapmap]
rs1469118	0.86[JPT][hapmap]
rs1477380	0.89[ASN][1000 genomes]
rs2113176	0.83[GIH][hapmap];0.86[JPT][hapmap];0.81[MKK][hapmap];0.82[TSI][hapmap]
rs4967869	0.87[CEU][hapmap]
rs7185024	0.89[ASN][1000 genomes]
rs7498210	0.86[MEX][hapmap]
rs993822	0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv34131	chr16:65137094-65379496	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65158200-65160200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr16:65158400-65160400	Enhancers	Breast Myoepithelial Primary Cells	Breast
3	chr16:65158400-65160400	Enhancers	Rectal Mucosa Donor 31	rectum
4	chr16:65158600-65160400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
5	chr16:65158600-65160800	Enhancers	Fetal Intestine Large	intestine
6	chr16:65158800-65160200	Enhancers	Fetal Intestine Small	intestine
7	chr16:65159000-65160400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr16:65159400-65160400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr16:65159400-65160400	Enhancers	Ovary	ovary
10	chr16:65159600-65160200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
11	chr16:65159600-65160200	Enhancers	HMEC	breast
12	chr16:65159600-65160200	Enhancers	NHEK	skin
13	chr16:65159600-65160400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr16:65159600-65160400	Enhancers	NH-A	brain
15	chr16:65159800-65160200	Enhancers	Sigmoid Colon	Sigmoid Colon
16	chr16:65159800-65160400	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr16:65159800-65160400	Enhancers	Fetal Stomach	stomach
18	chr16:65159800-65160400	Enhancers	Placenta Amnion	Placenta Amnion
19	chr16:65159800-65160400	Enhancers	Rectal Mucosa Donor 29	rectum
20	chr16:65160000-65160200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr16:65160000-65160200	Bivalent Enhancer	iPS DF 6.9 Cell Line	embryonic stem cell
22	chr16:65160000-65160200	Enhancers	Rectal Smooth Muscle	rectum
23	chr16:65160000-65160400	Active TSS	Stomach Smooth Muscle	stomach
24	chr16:65160000-65160400	Enhancers	Osteobl	bone

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