Variant report

Variant	rs7192357
Chromosome Location	chr16:75631195-75631196
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:75629955..75633290-chr16:75634545..75637067,3	MCF-7	breast:
2	chr16:75627208..75629939-chr16:75629940..75634197,5	MCF-7	breast:

Variant related genes	Relation type
ENSG00000065457	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs59487462	0.83[AMR][1000 genomes]
rs73615046	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916502	chr16:74845880-75732365	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	131 gene(s)	inside rSNPs	diseases
2	nsv931939	chr16:75261354-75765025	Weak transcription Bivalent/Poised TSS Strong transcription Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	104 gene(s)	inside rSNPs	diseases
3	nsv532561	chr16:75519574-75636977	Enhancers Flanking Active TSS Strong transcription Weak transcription Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	44 gene(s)	inside rSNPs	diseases
4	nsv532562	chr16:75614947-76371158	Weak transcription Active TSS Flanking Active TSS Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	50 gene(s)	inside rSNPs	diseases
5	nsv1062010	chr16:75628562-75825725	Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Weak transcription Enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	37 gene(s)	inside rSNPs	diseases
6	nsv1064880	chr16:75628562-75895699	Enhancers Genic enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases
7	nsv542960	chr16:75628562-75895699	ZNF genes & repeats Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:75610400-75634000	Weak transcription	Hela-S3	cervix
2	chr16:75610600-75633400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
3	chr16:75610600-75635200	Weak transcription	Fetal Kidney	kidney
4	chr16:75611400-75634000	Weak transcription	Colonic Mucosa	Colon
5	chr16:75612000-75635600	Weak transcription	Small Intestine	intestine
6	chr16:75612400-75631200	Weak transcription	Esophagus	oesophagus
7	chr16:75613200-75633400	Weak transcription	Pancreatic Islets	Pancreatic Islet
8	chr16:75613400-75635200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
9	chr16:75613600-75633000	Weak transcription	Ovary	ovary
10	chr16:75613800-75632800	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr16:75615000-75633400	Weak transcription	Primary T helper naive cells from peripheral blood	blood
12	chr16:75625200-75631200	Weak transcription	Aorta	Aorta
13	chr16:75625400-75631200	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr16:75625400-75635400	Weak transcription	Brain Substantia Nigra	brain
15	chr16:75625600-75631200	Weak transcription	Brain Anterior Caudate	brain
16	chr16:75625600-75633400	Weak transcription	Brain Cingulate Gyrus	brain
17	chr16:75625600-75648000	Weak transcription	Fetal Heart	heart
18	chr16:75626600-75633400	Weak transcription	Colon Smooth Muscle	Colon
19	chr16:75626800-75633200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr16:75628000-75633400	Weak transcription	Psoas Muscle	Psoas
21	chr16:75628000-75635200	Weak transcription	Right Ventricle	heart
22	chr16:75628200-75634000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr16:75628400-75631200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr16:75628400-75633400	Weak transcription	Skeletal Muscle Male	skeletal muscle
25	chr16:75628600-75635000	Weak transcription	NHLF	lung
26	chr16:75628600-75635800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr16:75628600-75636600	Weak transcription	Stomach Mucosa	stomach
28	chr16:75628800-75633400	Weak transcription	H1 Cell Line	embryonic stem cell
29	chr16:75628800-75634000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
30	chr16:75629000-75633400	Weak transcription	Primary T killer memory cells from peripheral blood	blood
31	chr16:75629000-75633400	Weak transcription	HSMM	muscle
32	chr16:75629000-75635200	Weak transcription	K562	blood
33	chr16:75629000-75636000	Weak transcription	NHDF-Ad	bronchial
34	chr16:75629000-75650600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
35	chr16:75629200-75631200	Weak transcription	NH-A	brain
36	chr16:75629200-75632800	Weak transcription	HepG2	liver
37	chr16:75629200-75633400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
38	chr16:75629400-75635200	Weak transcription	HUVEC	blood vessel
39	chr16:75629400-75635800	Strong transcription	Primary T cells from cord blood	blood
40	chr16:75629400-75635800	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
41	chr16:75629400-75636000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr16:75629600-75635800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
43	chr16:75629600-75636200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
44	chr16:75629600-75654800	Strong transcription	Fetal Stomach	stomach
45	chr16:75629800-75631400	Weak transcription	Primary neutrophils fromperipheralblood	blood
46	chr16:75629800-75636000	Strong transcription	Primary T helper cells PMA-I stimulated	--
47	chr16:75630200-75636000	Strong transcription	Cortex derived primary cultured neurospheres	brain
48	chr16:75630200-75636000	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
49	chr16:75630200-75636000	Strong transcription	Dnd41	blood
50	chr16:75630200-75638200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland

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