Variant report

Variant	rs719284
Chromosome Location	chr9:104005270-104005271
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10114402	1.00[ASN][1000 genomes]
rs1329078	1.00[AFR][1000 genomes];1.00[ASN][1000 genomes]
rs17764774	1.00[ASN][1000 genomes]
rs2000165	1.00[ASN][1000 genomes]
rs7018478	1.00[ASN][1000 genomes]
rs7021563	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831671	chr9:103858107-104020816	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:103998000-104016800	Weak transcription	HepG2	liver
2	chr9:103998200-104006000	Weak transcription	Brain Angular Gyrus	brain
3	chr9:104003600-104007200	Weak transcription	Adipose Nuclei	Adipose
4	chr9:104004400-104006000	Enhancers	Brain Anterior Caudate	brain
5	chr9:104004400-104006200	Enhancers	Brain Cingulate Gyrus	brain
6	chr9:104004600-104006000	Enhancers	Brain Inferior Temporal Lobe	brain
7	chr9:104004800-104006000	Enhancers	Brain Substantia Nigra	brain
8	chr9:104004800-104006200	Enhancers	Brain Hippocampus Middle	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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