Variant report

Variant	rs7193477
Chromosome Location	chr16:81886182-81886183
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:81885460..81888078-chr16:81889723..81891376,3	MCF-7	breast:
2	chr16:81885841..81888862-chr16:81895847..81897898,3	K562	blood:

Extended variants
information (count: 40 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1143686	0.88[ASN][1000 genomes]
rs12445050	0.83[ASN][1000 genomes]
rs12922252	0.81[ASN][1000 genomes]
rs12926118	0.81[ASN][1000 genomes]
rs13334290	0.85[ASN][1000 genomes]
rs13335344	0.85[ASN][1000 genomes]
rs13338037	0.85[ASN][1000 genomes]
rs13339274	0.85[ASN][1000 genomes]
rs28734133	0.83[ASN][1000 genomes]
rs34107670	0.83[ASN][1000 genomes]
rs35386949	0.83[ASN][1000 genomes]
rs35554443	0.83[ASN][1000 genomes]
rs4072683	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4072828	0.88[ASN][1000 genomes]
rs4072830	0.86[ASN][1000 genomes]
rs4072831	0.88[ASN][1000 genomes]
rs41309272	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs4522412	0.88[ASN][1000 genomes]
rs55829397	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55856197	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56188311	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62044142	0.81[ASN][1000 genomes]
rs62045701	0.85[ASN][1000 genomes]
rs62045702	0.85[ASN][1000 genomes]
rs62045704	0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62045706	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7184243	0.88[ASN][1000 genomes]
rs7185362	0.88[ASN][1000 genomes]
rs7186146	0.88[ASN][1000 genomes]
rs7188868	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7191743	0.88[ASN][1000 genomes]
rs7192115	0.88[ASN][1000 genomes]
rs7192266	0.88[ASN][1000 genomes]
rs7196980	0.85[ASN][1000 genomes]
rs74029252	0.85[ASN][1000 genomes]
rs7500467	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs8182116	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv948448	chr16:81198147-81906766	Enhancers Flanking Active TSS Weak transcription Strong transcription Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
2	nsv573365	chr16:81804972-81975892	Strong transcription Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
3	nsv1065088	chr16:81878481-81953248	Enhancers ZNF genes & repeats Weak transcription Strong transcription Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:81866800-81898600	Weak transcription	Right Atrium	heart
2	chr16:81871200-81897200	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr16:81876200-81918200	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr16:81876400-81889400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
5	chr16:81877000-81889200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
6	chr16:81877800-81890400	Genic enhancers	Primary B cells from peripheral blood	blood
7	chr16:81879400-81888000	Weak transcription	Primary monocytes fromperipheralblood	blood
8	chr16:81879800-81888000	Weak transcription	Primary neutrophils fromperipheralblood	blood
9	chr16:81880000-81887600	Weak transcription	Monocytes-CD14+_RO01746	blood
10	chr16:81880000-81889000	Weak transcription	Primary hematopoietic stem cells	blood
11	chr16:81880000-81889200	Weak transcription	Lung	lung
12	chr16:81880000-81911200	Weak transcription	Pancreas	Pancrea
13	chr16:81880400-81888200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr16:81880400-81908200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
15	chr16:81882800-81897200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
16	chr16:81884400-81897200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
17	chr16:81885000-81886600	Enhancers	Duodenum Mucosa	Duodenum
18	chr16:81885400-81886200	Enhancers	Small Intestine	intestine
19	chr16:81885400-81886400	Genic enhancers	GM12878-XiMat	blood
20	chr16:81885400-81886600	Enhancers	Fetal Intestine Large	intestine
21	chr16:81885600-81886400	Genic enhancers	Primary B cells from cord blood	blood
22	chr16:81885600-81886600	Enhancers	Fetal Intestine Small	intestine
23	chr16:81885600-81886600	Enhancers	Placenta	Placenta
24	chr16:81885600-81888000	Genic enhancers	Primary Natural Killer cells fromperipheralblood	blood
25	chr16:81885800-81886600	Strong transcription	Primary hematopoietic stem cells short term culture	blood
26	chr16:81885800-81886600	Enhancers	Esophagus	oesophagus
27	chr16:81885800-81886600	Enhancers	Spleen	Spleen
28	chr16:81886000-81887400	Enhancers	Breast Myoepithelial Primary Cells	Breast
29	chr16:81886000-81889600	Weak transcription	Right Ventricle	heart

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