Variant report

Variant	rs7195737
Chromosome Location	chr16:79696818-79696819
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs1364342	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs1424239	0.95[ASN][1000 genomes]
rs1469143	1.00[CEU][hapmap];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs2348182	0.86[CHB][hapmap];0.94[CHD][hapmap];0.82[JPT][hapmap]
rs4888044	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs4888045	1.00[AMR][1000 genomes];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs6564691	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs7186758	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs7200357	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7342775	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs889790	1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs9936819	0.89[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9939984	1.00[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs9940742	1.00[CEU][hapmap];1.00[CHB][hapmap];0.94[CHD][hapmap];0.81[GIH][hapmap];1.00[JPT][hapmap];1.00[MEX][hapmap];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs9940892	0.89[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv573285	chr16:79158182-80127326	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	nsv833295	chr16:79568878-79726768	Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv906992	chr16:79649394-79769790	Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv530714	chr16:79661581-79925435	Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv833296	chr16:79692236-79889727	Enhancers Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:79688200-79698400	Weak transcription	Right Atrium	heart
2	chr16:79691200-79698200	Weak transcription	Fetal Lung	lung
3	chr16:79693400-79698200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
4	chr16:79694200-79697000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr16:79694200-79697000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr16:79696600-79698600	Enhancers	Esophagus	oesophagus
7	chr16:79696600-79698800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr16:79696600-79698800	Enhancers	HMEC	breast
9	chr16:79696800-79698000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr16:79696800-79698000	Weak transcription	Pancreas	Pancrea
11	chr16:79696800-79698600	Enhancers	NHEK	skin

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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