Variant report

Variant	rs7195772
Chromosome Location	chr16:65142886-65142887
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-TK2-11	chr16:65142763-65143053	l_1350_chr16:65142762-65143882_testes

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12051500	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12232421	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12443573	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs16968496	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16968497	0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs16968508	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7193430	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs7200327	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv34131	chr16:65137094-65379496	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:47 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65095800-65152000	Weak transcription	Fetal Intestine Large	intestine
2	chr16:65106200-65147400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
3	chr16:65106400-65147600	Weak transcription	Fetal Muscle Trunk	muscle
4	chr16:65106800-65151800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
5	chr16:65115800-65147600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
6	chr16:65120800-65148600	Weak transcription	Aorta	Aorta
7	chr16:65122200-65147400	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr16:65129200-65148400	Weak transcription	Fetal Kidney	kidney
9	chr16:65130200-65147400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr16:65134200-65148600	Weak transcription	HMEC	breast
11	chr16:65135400-65143600	Weak transcription	Sigmoid Colon	Sigmoid Colon
12	chr16:65136800-65144600	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr16:65137000-65147400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr16:65139400-65144200	Strong transcription	Osteobl	bone
15	chr16:65139400-65144400	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
16	chr16:65139600-65144000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr16:65139600-65148000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr16:65139800-65147400	Weak transcription	Brain Hippocampus Middle	brain
19	chr16:65140200-65144400	Strong transcription	Fetal Lung	lung
20	chr16:65140400-65150200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr16:65140600-65147400	Weak transcription	HUES6 Cell Line	embryonic stem cell
22	chr16:65141000-65144800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
23	chr16:65141200-65143400	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
24	chr16:65141200-65150000	Weak transcription	Colon Smooth Muscle	Colon
25	chr16:65141200-65150200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr16:65141400-65145200	Weak transcription	Fetal Brain Male	brain
27	chr16:65141400-65148200	Weak transcription	Rectal Smooth Muscle	rectum
28	chr16:65141400-65149400	Weak transcription	Fetal Intestine Small	intestine
29	chr16:65141600-65144400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
30	chr16:65141800-65143400	Weak transcription	Brain Anterior Caudate	brain
31	chr16:65141800-65144000	Strong transcription	Fetal Muscle Leg	muscle
32	chr16:65141800-65144400	Weak transcription	Left Ventricle	heart
33	chr16:65141800-65148600	Weak transcription	Brain Germinal Matrix	brain
34	chr16:65142000-65143400	Weak transcription	Placenta	Placenta
35	chr16:65142200-65143200	Weak transcription	NHDF-Ad	bronchial
36	chr16:65142200-65143400	Weak transcription	Spleen	Spleen
37	chr16:65142200-65143600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
38	chr16:65142200-65143600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr16:65142200-65145200	Weak transcription	Fetal Stomach	stomach
40	chr16:65142200-65146000	Weak transcription	HSMM	muscle
41	chr16:65142200-65147400	Weak transcription	HSMMtube	muscle
42	chr16:65142200-65147600	Weak transcription	NHLF	lung
43	chr16:65142200-65148600	Weak transcription	Muscle Satellite Cultured Cells	--
44	chr16:65142200-65149800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
45	chr16:65142400-65147400	Weak transcription	Stomach Smooth Muscle	stomach
46	chr16:65142600-65146000	Weak transcription	NH-A	brain
47	chr16:65142800-65147400	Enhancers	Ovary	ovary

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links