Variant report

Variant	rs7196224
Chromosome Location	chr16:65158883-65158884
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	CEBPB	chr16:65158869-65159224	IMR90	lung:	n/a	chr16:65159055-65159066
2	POLR2A	chr16:65153328-65158908	SK-N-MC	brain:	n/a	n/a
3	POLR2A	chr16:65158466-65158919	HUVEC	blood vessel:	n/a	n/a
4	POLR2A	chr16:65152756-65159285	IMR90	lung:	n/a	n/a
5	POLR2A	chr16:65157883-65158961	SK-N-MC	brain:	n/a	n/a

Variant related genes	Relation type
CDH11	TF binding region

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs34055956	0.83[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62044963	0.82[ASN][1000 genomes]
rs62044964	0.81[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs6498980	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833260	chr16:65050647-65218759	Enhancers Strong transcription Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	esv34131	chr16:65137094-65379496	Flanking Active TSS Weak transcription Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:65152000-65159400	Active TSS	Ovary	ovary
2	chr16:65154400-65159800	Bivalent/Poised TSS	HUES6 Cell Line	embryonic stem cell
3	chr16:65155600-65160000	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr16:65157600-65159000	Flanking Active TSS	NH-A	brain
5	chr16:65157800-65160000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr16:65158000-65159000	Flanking Active TSS	NHDF-Ad	bronchial
7	chr16:65158200-65159000	Flanking Bivalent TSS/Enh	Fetal Kidney	kidney
8	chr16:65158200-65159000	Enhancers	Placenta Amnion	Placenta Amnion
9	chr16:65158200-65159200	Enhancers	Fetal Brain Female	brain
10	chr16:65158200-65159600	Weak transcription	HMEC	breast
11	chr16:65158200-65160200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
12	chr16:65158400-65159400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
13	chr16:65158400-65159400	Enhancers	Rectal Mucosa Donor 29	rectum
14	chr16:65158400-65159600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr16:65158400-65159600	Weak transcription	Spleen	Spleen
16	chr16:65158400-65160400	Enhancers	Breast Myoepithelial Primary Cells	Breast
17	chr16:65158400-65160400	Enhancers	Rectal Mucosa Donor 31	rectum
18	chr16:65158600-65159000	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
19	chr16:65158600-65159800	Enhancers	Stomach Smooth Muscle	stomach
20	chr16:65158600-65160400	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
21	chr16:65158600-65160800	Enhancers	Fetal Intestine Large	intestine
22	chr16:65158800-65159000	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
23	chr16:65158800-65159000	Enhancers	Brain Anterior Caudate	brain
24	chr16:65158800-65159000	Bivalent/Poised TSS	Fetal Lung	lung
25	chr16:65158800-65159600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
26	chr16:65158800-65159600	Enhancers	Osteobl	bone
27	chr16:65158800-65159800	Weak transcription	Fetal Stomach	stomach
28	chr16:65158800-65159800	Weak transcription	Rectal Smooth Muscle	rectum
29	chr16:65158800-65160200	Enhancers	Fetal Intestine Small	intestine

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