Variant report

Variant	rs7196885
Chromosome Location	chr16:12008095-12008096
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:11886565..11889362-chr16:12006902..12008695,2	K562	blood:
2	chr16:11942158..11945019-chr16:12007276..12009748,2	K562	blood:
3	chr16:11941713..11946689-chr16:12006948..12011249,6	MCF-7	breast:
4	chr16:12006532..12011371-chr16:12068460..12073371,6	K562	blood:
5	chr16:11988764..11995180-chr16:12006980..12012068,9	MCF-7	breast:
6	chr16:12007951..12010484-chr17:59476175..59479111,2	MCF-7	breast:
7	chr16:11831944..11836692-chr16:12007199..12011492,4	K562	blood:
8	chr16:12006809..12011472-chr16:12069677..12072698,7	MCF-7	breast:
9	chr16:12007765..12009301-chr16:12009316..12010905,2	MCF-7	breast:
10	chr16:11988100..11996073-chr16:12007143..12011577,10	MCF-7	breast:
11	chr16:12007711..12010113-chr16:12069770..12071913,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000153066	Chromatin interaction
ENSG00000103342	Chromatin interaction
ENSG00000266163	Chromatin interaction
ENSG00000171490	Chromatin interaction
ENSG00000048471	Chromatin interaction
ENSG00000263307	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000234719	Chromatin interaction
ENSG00000260488	Chromatin interaction
ENSG00000262420	Chromatin interaction
ENSG00000267131	Chromatin interaction
ENSG00000267280	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs60737746	1.00[AFR][1000 genomes]
rs73511616	1.00[AFR][1000 genomes]
rs73511650	1.00[AFR][1000 genomes]
rs73511694	1.00[AFR][1000 genomes]
rs8043940	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042660	chr16:11846873-12110435	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv571458	chr16:11925008-12087282	Weak transcription Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	46 gene(s)	inside rSNPs	diseases
3	nsv1735	chr16:11986963-12031597	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	23 gene(s)	inside rSNPs	diseases
4	nsv974848	chr16:12005053-12020022	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases
5	esv3410856	chr16:12007876-12010424	Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:11987800-12008400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr16:12002000-12008200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr16:12006200-12008600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr16:12006200-12008600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr16:12006200-12008600	Transcr. at gene 5' and 3'	K562	blood
6	chr16:12006600-12008600	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr16:12006600-12010400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
8	chr16:12006800-12008200	Transcr. at gene 5' and 3'	Dnd41	blood
9	chr16:12006800-12008400	Flanking Active TSS	Osteobl	bone
10	chr16:12006800-12008600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr16:12006800-12008600	Flanking Active TSS	HUVEC	blood vessel
12	chr16:12006800-12009000	Flanking Active TSS	Brain Germinal Matrix	brain
13	chr16:12007000-12008200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
14	chr16:12007000-12008400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
15	chr16:12007000-12008400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
16	chr16:12007000-12008600	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr16:12007000-12008600	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
18	chr16:12007000-12009000	Flanking Active TSS	Primary B cells from cord blood	blood
19	chr16:12007200-12008200	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
20	chr16:12007200-12008200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
21	chr16:12007200-12008200	Flanking Active TSS	Hela-S3	cervix
22	chr16:12007200-12008200	Transcr. at gene 5' and 3'	HSMM	muscle
23	chr16:12007200-12008200	Flanking Active TSS	NH-A	brain
24	chr16:12007200-12008400	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
25	chr16:12007200-12008400	Flanking Active TSS	Colon Smooth Muscle	Colon
26	chr16:12007200-12008400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
27	chr16:12007200-12008400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
28	chr16:12007200-12008400	Flanking Active TSS	NHDF-Ad	bronchial
29	chr16:12007200-12008600	Flanking Active TSS	Liver	Liver
30	chr16:12007200-12008600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
31	chr16:12007200-12008600	Transcr. at gene 5' and 3'	NHEK	skin
32	chr16:12007200-12008800	Flanking Active TSS	Duodenum Mucosa	Duodenum
33	chr16:12007200-12009000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
34	chr16:12007200-12010400	Active TSS	Right Atrium	heart
35	chr16:12007200-12010600	Active TSS	A549	lung
36	chr16:12007400-12008200	Flanking Active TSS	H1 Cell Line	embryonic stem cell
37	chr16:12007400-12008200	Transcr. at gene 5' and 3'	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
38	chr16:12007400-12008200	Flanking Active TSS	Sigmoid Colon	Sigmoid Colon
39	chr16:12007400-12008200	Flanking Active TSS	Thymus	Thymus
40	chr16:12007400-12008200	Flanking Bivalent TSS/Enh	HepG2	liver
41	chr16:12007400-12008400	Transcr. at gene 5' and 3'	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
42	chr16:12007400-12008400	Flanking Active TSS	Primary T cells from cord blood	blood
43	chr16:12007400-12008400	Flanking Active TSS	Adipose Nuclei	Adipose
44	chr16:12007400-12008400	Flanking Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
45	chr16:12007400-12008400	Flanking Active TSS	Fetal Kidney	kidney
46	chr16:12007400-12008400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
47	chr16:12007400-12008600	Flanking Active TSS	Brain Anterior Caudate	brain
48	chr16:12007400-12008600	Flanking Active TSS	Brain Cingulate Gyrus	brain
49	chr16:12007400-12008600	Flanking Active TSS	Brain Hippocampus Middle	brain
50	chr16:12007400-12008600	Flanking Active TSS	Brain Inferior Temporal Lobe	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links