Variant report

Variant	rs71970791
Chromosome Location	chr3:111857890-111857891
allele	-/CAG
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1010219	chr3:111856709-111923647	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
2	esv2601539	chr3:111857888-111857890	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	esv2146826	chr3:111857888-111857891	Weak transcription Enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111852200-111863400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr3:111853400-111867400	Weak transcription	Gastric	stomach
3	chr3:111854600-111858000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr3:111855000-111858000	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr3:111855200-111858000	Enhancers	HUES64 Cell Line	embryonic stem cell
6	chr3:111855400-111858000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr3:111856200-111860200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr3:111856200-111867400	Weak transcription	Thymus	Thymus
9	chr3:111856200-111867600	Weak transcription	Left Ventricle	heart
10	chr3:111856400-111861800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
11	chr3:111856400-111862400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
12	chr3:111857000-111858400	Weak transcription	Primary T helper cells PMA-I stimulated	--
13	chr3:111857000-111861000	Weak transcription	Primary hematopoietic stem cells	blood
14	chr3:111857200-111860200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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