Variant report
| Variant | rs7197817 |
|---|---|
| Chromosome Location | chr16:80857608-80857609 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:6)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:6 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr16:80857526..80859667-chr16:80861223..80862909,2 | K562 | blood: | |
| 2 | chr16:80856381..80858777-chr16:80863162..80866586,3 | K562 | blood: | |
| 3 | chr16:80852508..80854176-chr16:80857247..80859304,2 | K562 | blood: | |
| 4 | chr16:80855502..80857897-chr6:27781326..27783540,2 | MCF-7 | breast: | |
| 5 | chr16:80841190..80844369-chr16:80857041..80859496,3 | MCF-7 | breast: | |
| 6 | chr16:80857146..80859667-chr16:80861223..80862793,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000196374 | Chromatin interaction |
| ENSG00000182611 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:27)
| rs_ID | r2[population] |
|---|---|
| rs16954126 | 1.00[EUR][1000 genomes] |
| rs16954130 | 1.00[EUR][1000 genomes] |
| rs28448699 | 1.00[EUR][1000 genomes] |
| rs55696405 | 1.00[EUR][1000 genomes] |
| rs59241015 | 1.00[EUR][1000 genomes] |
| rs61153381 | 0.83[AMR][1000 genomes] |
| rs61281082 | 1.00[EUR][1000 genomes] |
| rs7193908 | 0.83[AMR][1000 genomes] |
| rs7197605 | 0.83[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74028804 | 1.00[EUR][1000 genomes] |
| rs74028805 | 1.00[EUR][1000 genomes] |
| rs74028808 | 1.00[EUR][1000 genomes] |
| rs74028811 | 1.00[EUR][1000 genomes] |
| rs74028812 | 1.00[EUR][1000 genomes] |
| rs74028813 | 1.00[EUR][1000 genomes] |
| rs74028815 | 1.00[EUR][1000 genomes] |
| rs74028817 | 1.00[EUR][1000 genomes] |
| rs74028818 | 1.00[EUR][1000 genomes] |
| rs74028821 | 1.00[EUR][1000 genomes] |
| rs74030451 | 0.83[AMR][1000 genomes] |
| rs74030452 | 0.83[AMR][1000 genomes] |
| rs74030453 | 0.83[AMR][1000 genomes] |
| rs74030476 | 0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes] |
| rs74030484 | 1.00[EUR][1000 genomes] |
| rs74030485 | 1.00[EUR][1000 genomes] |
| rs8051051 | 1.00[EUR][1000 genomes] |
| rs8058054 | 1.00[EUR][1000 genomes] |
Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1060621 | chr16:80532848-80980616 | Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 2 | nsv542989 | chr16:80532848-80980616 | Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 29 gene(s) | inside rSNPs | diseases |
| 3 | esv3451298 | chr16:80696935-80997389 | Weak transcription Enhancers Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 4 | esv3350075 | chr16:80696955-80997359 | Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 21 gene(s) | inside rSNPs | diseases |
| 5 | nsv542990 | chr16:80729797-80918198 | Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 6 | nsv833301 | chr16:80732170-80928751 | Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive regionlncRNA | 12 gene(s) | inside rSNPs | diseases |
| 7 | nsv457560 | chr16:80825206-80858143 | Weak transcription Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| 8 | nsv573302 | chr16:80825206-80858143 | Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' | TF binding regionCpG islandChromatin interactive region | 9 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
