Variant report

Variant	rs7198176
Chromosome Location	chr16:82647971-82647972
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82640079..82642520-chr16:82646596..82648628,2	MCF-7	breast:

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10514547	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12443878	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs12444338	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12598679	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1541928	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs17175173	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs17175622	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17247500	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17260630	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs28597883	0.91[AFR][1000 genomes]
rs3865188	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3865190	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs4597315	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4782721	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs4783241	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs4783242	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs59317411	0.81[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs62038459	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62040560	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs62040561	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs736718	0.95[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs8062260	0.87[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs9939683	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs9940266	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
6	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
7	nsv833305	chr16:82563888-82722084	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1059718	chr16:82564054-82810003	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1062787	chr16:82601618-82676019	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv542998	chr16:82601618-82676019	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82638000-82649400	Weak transcription	Hela-S3	cervix
2	chr16:82647600-82648000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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