Variant report

Variant	rs7198373
Chromosome Location	chr16:80599107-80599108
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr16:80595839..80600096-chr16:80600224..80603898,5	MCF-7	breast:
2	chr16:80598414..80600726-chr16:80604095..80606613,2	MCF-7	breast:
3	chr16:80593676..80596340-chr16:80598060..80599713,2	MCF-7	breast:
4	chr16:80598399..80600334-chr16:80611108..80613463,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260737	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs8057411	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv907001	chr16:80405292-80620611	Active TSS Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
2	nsv833300	chr16:80475066-80601036	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv1060621	chr16:80532848-80980616	Weak transcription Active TSS ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases
4	nsv542989	chr16:80532848-80980616	Enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Weak transcription Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80597800-80599200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
2	chr16:80597800-80599200	Enhancers	Primary T helper naive cells from peripheral blood	blood
3	chr16:80597800-80599200	Enhancers	Primary T helper cells fromperipheralblood	blood
4	chr16:80597800-80599200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
5	chr16:80597800-80599400	Enhancers	Primary T cells fromperipheralblood	blood
6	chr16:80598400-80602000	Weak transcription	Fetal Intestine Small	intestine
7	chr16:80598400-80603000	Weak transcription	Small Intestine	intestine
8	chr16:80598600-80599200	Enhancers	H9 Cell Line	embryonic stem cell
9	chr16:80598800-80602800	Weak transcription	Fetal Intestine Large	intestine
10	chr16:80599000-80599200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr16:80599000-80599200	Enhancers	Primary T killer memory cells from peripheral blood	blood
12	chr16:80599000-80602800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
13	chr16:80599000-80602800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
14	chr16:80599000-80602800	Weak transcription	Primary T helper cells PMA-I stimulated	--
15	chr16:80599000-80602800	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
16	chr16:80599000-80603000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
17	chr16:80599000-80603200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
18	chr16:80599000-80603400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
19	chr16:80599000-80603400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr16:80599000-80607800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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