Variant report

Variant	rs719851
Chromosome Location	chr14:33041185-33041186
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33040924..33044247-chr14:33045114..33047639,3	MCF-7	breast:

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12589507	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12589525	1.00[CEU][hapmap];1.00[CHB][hapmap];0.96[JPT][hapmap];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1950702	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[YRI][hapmap];0.82[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1950704	0.85[YRI][hapmap]
rs3784201	1.00[YRI][hapmap];0.82[AFR][1000 genomes]
rs55665851	0.86[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs58574409	0.92[ASN][1000 genomes]
rs59755849	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61699048	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33028600-33041200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:33034400-33058200	Weak transcription	Psoas Muscle	Psoas
3	chr14:33034800-33042000	Weak transcription	Left Ventricle	heart
4	chr14:33035000-33045600	Weak transcription	Fetal Muscle Leg	muscle
5	chr14:33035000-33045600	Weak transcription	HSMMtube	muscle
6	chr14:33035200-33041200	Weak transcription	Right Ventricle	heart
7	chr14:33035200-33041200	Weak transcription	Stomach Smooth Muscle	stomach
8	chr14:33035400-33062600	Weak transcription	Aorta	Aorta
9	chr14:33037000-33045600	Weak transcription	Brain Angular Gyrus	brain
10	chr14:33037200-33041800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
11	chr14:33037200-33042000	Weak transcription	Brain Inferior Temporal Lobe	brain
12	chr14:33037200-33042200	Weak transcription	Brain Cingulate Gyrus	brain
13	chr14:33037400-33041200	Weak transcription	Brain Substantia Nigra	brain
14	chr14:33037400-33041200	Weak transcription	Rectal Mucosa Donor 31	rectum
15	chr14:33037400-33041600	Weak transcription	Brain Hippocampus Middle	brain
16	chr14:33037400-33041600	Weak transcription	Duodenum Smooth Muscle	Duodenum
17	chr14:33037600-33041600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
18	chr14:33037600-33045600	Weak transcription	Brain Anterior Caudate	brain
19	chr14:33038000-33041200	Weak transcription	Rectal Smooth Muscle	rectum
20	chr14:33040600-33042000	Enhancers	Fetal Intestine Large	intestine
21	chr14:33040800-33041200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr14:33040800-33041600	Flanking Active TSS	Liver	Liver
23	chr14:33040800-33041800	Enhancers	Fetal Intestine Small	intestine
24	chr14:33041000-33041200	Enhancers	Fetal Heart	heart
25	chr14:33041000-33041400	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr14:33041000-33041800	Enhancers	Duodenum Mucosa	Duodenum
27	chr14:33041000-33042400	Enhancers	Colon Smooth Muscle	Colon
28	chr14:33041000-33045800	Weak transcription	Brain Germinal Matrix	brain

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