Variant report

Variant	rs7200094
Chromosome Location	chr16:80382132-80382133
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs1038403	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs4523942	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73579630	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1061068	chr16:80207546-80537052	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv949197	chr16:80284557-80456403	Weak transcription Enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1064628	chr16:80286004-80406177	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
4	nsv542986	chr16:80286004-80406177	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	esv2762333	chr16:80307755-80509983	Flanking Active TSS Enhancers Bivalent Enhancer Weak transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
6	nsv1056026	chr16:80317627-80471469	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Bivalent/Poised TSS ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
7	nsv542987	chr16:80317627-80471469	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
8	nsv906999	chr16:80335933-80387019	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
9	nsv833299	chr16:80341745-80549683	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:80380800-80383600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
2	chr16:80381400-80382200	Enhancers	Brain Germinal Matrix	brain
3	chr16:80381400-80382400	Enhancers	Brain Hippocampus Middle	brain
4	chr16:80381400-80383600	Enhancers	Fetal Stomach	stomach
5	chr16:80381600-80382200	Enhancers	Ovary	ovary
6	chr16:80381600-80382400	Enhancers	Fetal Muscle Leg	muscle
7	chr16:80381800-80382200	Enhancers	Breast Myoepithelial Primary Cells	Breast
8	chr16:80381800-80382200	Enhancers	Adipose Nuclei	Adipose
9	chr16:80381800-80382200	Active TSS	Rectal Smooth Muscle	rectum
10	chr16:80381800-80382200	Flanking Active TSS	Stomach Smooth Muscle	stomach
11	chr16:80381800-80382200	Enhancers	Spleen	Spleen
12	chr16:80381800-80382400	Enhancers	Brain Inferior Temporal Lobe	brain
13	chr16:80381800-80382400	Enhancers	Fetal Muscle Trunk	muscle
14	chr16:80381800-80382400	Enhancers	Lung	lung
15	chr16:80381800-80382600	Enhancers	Liver	Liver
16	chr16:80381800-80383200	Enhancers	Fetal Lung	lung
17	chr16:80382000-80382200	Enhancers	Muscle Satellite Cultured Cells	--
18	chr16:80382000-80382200	Enhancers	Brain Anterior Caudate	brain
19	chr16:80382000-80382200	Enhancers	Brain Substantia Nigra	brain
20	chr16:80382000-80382200	Flanking Active TSS	Duodenum Mucosa	Duodenum
21	chr16:80382000-80382200	Enhancers	HSMM	muscle
22	chr16:80382000-80382400	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
23	chr16:80382000-80382400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
24	chr16:80382000-80382400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links