Variant report

Variant	rs7200282
Chromosome Location	chr16:70605280-70605281
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:12)
CpG islands
(count:0)
Chromatin interactive
region (count:5)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:12 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr16:70604855-70605375	HepG2	liver:	n/a	n/a
2	POLR2A	chr16:70604927-70605333	K562	blood:	n/a	n/a
3	POLR2A	chr16:70604796-70605614	PFSK-1	brain:	n/a	n/a
4	POLR2A	chr16:70604523-70605360	Hela-S3	cervix:	n/a	n/a
5	POLR2A	chr16:70604644-70605375	Hela-S3	cervix:	n/a	n/a
6	POLR2A	chr16:70604872-70605508	K562	blood:	n/a	n/a
7	POLR2A	chr16:70605012-70605467	K562	blood:	n/a	n/a
8	POLR2A	chr16:70605031-70605554	GM12878	blood:	n/a	n/a
9	POLR2A	chr16:70604533-70605311	H1-hESC	embryonic stem cell:	n/a	n/a
10	POLR2A	chr16:70604907-70605468	K562	blood:	n/a	n/a
11	POLR2A	chr16:70603398-70612236	HepG2	liver:	n/a	n/a
12	POLR2A	chr16:70604595-70605285	K562	blood:	n/a	n/a

No data

(count:5 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr16:70556571..70559588-chr16:70605085..70607867,3	MCF-7	breast:
2	chr16:70604065..70607054-chr16:70608889..70610552,2	K562	blood:
3	chr16:70604632..70605308-chr19:47747415..47748133,2	HCT-116	colon:
4	chr16:70603041..70604575-chr16:70605082..70606614,2	MCF-7	breast:
5	chr16:70601244..70603695-chr16:70604448..70607649,3	K562	blood:

No data

Variant related genes	Relation type
ENSG00000260023	TF binding region
ENSG00000103051	Chromatin interaction
ENSG00000260023	Chromatin interaction
ENSG00000189091	Chromatin interaction

rs_ID	r²[population]
rs7185508	1.00[MEX][hapmap]
rs8052171	1.00[MEX][hapmap]
rs8058438	1.00[MEX][hapmap]
rs8058702	1.00[MEX][hapmap]

SNP	Gene	Cis/trans	Tissue	Source
rs7200282	PRRG4	trans	lymphoblastoid	seeQTL

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:70559400-70606200	Strong transcription	Fetal Stomach	stomach
2	chr16:70560400-70605600	Strong transcription	Placenta	Placenta
3	chr16:70560400-70607800	Strong transcription	Rectal Mucosa Donor 29	rectum
4	chr16:70560600-70609600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
5	chr16:70560800-70608800	Strong transcription	Primary neutrophils fromperipheralblood	blood
6	chr16:70561000-70608800	Strong transcription	Fetal Thymus	thymus
7	chr16:70561000-70609000	Strong transcription	H1 Cell Line	embryonic stem cell
8	chr16:70561000-70609400	Strong transcription	Primary monocytes fromperipheralblood	blood
9	chr16:70561000-70610000	Strong transcription	Thymus	Thymus
10	chr16:70561200-70609400	Strong transcription	Primary hematopoietic stem cells short term culture	blood
11	chr16:70561200-70609600	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr16:70561400-70607600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
13	chr16:70561400-70609000	Strong transcription	Primary B cells from cord blood	blood
14	chr16:70561400-70610000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr16:70561600-70609000	Strong transcription	HUES64 Cell Line	embryonic stem cell
16	chr16:70561600-70609200	Strong transcription	Monocytes-CD14+_RO01746	blood
17	chr16:70561600-70609600	Strong transcription	iPS-18 Cell Line	embryonic stem cell
18	chr16:70561600-70609800	Strong transcription	iPS-15b Cell Line	embryonic stem cell
19	chr16:70562200-70609600	Strong transcription	Rectal Mucosa Donor 31	rectum
20	chr16:70562800-70608800	Strong transcription	Placenta Amnion	Placenta Amnion
21	chr16:70562800-70609000	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
22	chr16:70563000-70606400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr16:70563200-70605800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr16:70563200-70606600	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr16:70563200-70609000	Strong transcription	Primary B cells from peripheral blood	blood
26	chr16:70563200-70609600	Strong transcription	Primary T cells from cord blood	blood
27	chr16:70563200-70609800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
28	chr16:70563200-70610000	Strong transcription	Cortex derived primary cultured neurospheres	brain
29	chr16:70563400-70608400	Strong transcription	Fetal Brain Female	brain
30	chr16:70563400-70609000	Strong transcription	Brain Anterior Caudate	brain
31	chr16:70563400-70609800	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
32	chr16:70563400-70610000	Strong transcription	A549	lung
33	chr16:70563600-70607400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
34	chr16:70563600-70608200	Strong transcription	HepG2	liver
35	chr16:70563600-70609600	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
36	chr16:70563800-70606200	Strong transcription	Duodenum Mucosa	Duodenum
37	chr16:70563800-70608600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
38	chr16:70563800-70610000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr16:70564000-70607800	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr16:70564600-70608800	Strong transcription	Hela-S3	cervix
41	chr16:70566800-70608000	Strong transcription	Primary T helper cells fromperipheralblood	blood
42	chr16:70569400-70609000	Strong transcription	K562	blood
43	chr16:70570000-70609600	Strong transcription	Dnd41	blood
44	chr16:70570400-70608600	Strong transcription	Sigmoid Colon	Sigmoid Colon
45	chr16:70570800-70606600	Strong transcription	Colonic Mucosa	Colon
46	chr16:70571000-70608200	Strong transcription	GM12878-XiMat	blood
47	chr16:70571200-70606400	Strong transcription	Fetal Kidney	kidney
48	chr16:70571600-70607000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr16:70574600-70609800	Strong transcription	Primary T cells fromperipheralblood	blood
50	chr16:70574800-70607800	Strong transcription	Primary T helper naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links