Variant report

Variant	rs7202931
Chromosome Location	chr16:82662463-82662464
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:82662347..82663140-chr16:89197490..89198337,2	MCF-7	breast:

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs10514548	0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs10871434	0.88[AMR][1000 genomes];0.89[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12051213	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12051272	0.96[ASN][1000 genomes]
rs12444338	0.81[AMR][1000 genomes];0.91[ASN][1000 genomes]
rs12596316	0.80[ASN][1000 genomes]
rs12598679	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs16957889	0.92[ASN][1000 genomes]
rs2116971	0.80[EUR][1000 genomes]
rs2163869	0.82[AMR][1000 genomes]
rs2239857	0.96[ASN][1000 genomes]
rs28597883	0.86[ASN][1000 genomes]
rs3865188	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4597315	0.81[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs4783241	0.81[AMR][1000 genomes];0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4783244	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7204787	0.82[AMR][1000 genomes]
rs7205148	0.90[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs8051657	0.94[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs8060301	0.97[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8062260	0.92[ASN][1000 genomes]
rs9925671	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532598	chr16:82034475-82738733	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	28 gene(s)	inside rSNPs	diseases
2	nsv532599	chr16:82074439-82926863	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
3	nsv573367	chr16:82140561-83040846	Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	27 gene(s)	inside rSNPs	diseases
4	nsv1065896	chr16:82213517-82731994	Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
5	nsv1057341	chr16:82363800-83198907	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
6	nsv542997	chr16:82363800-83198907	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	12 gene(s)	inside rSNPs	diseases
7	nsv833305	chr16:82563888-82722084	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
8	nsv1059718	chr16:82564054-82810003	Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
9	nsv1062787	chr16:82601618-82676019	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
10	nsv542998	chr16:82601618-82676019	Enhancers Bivalent Enhancer Active TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:58 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:82660200-82662600	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
2	chr16:82660200-82663800	Active TSS	Aorta	Aorta
3	chr16:82661200-82662600	Flanking Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
4	chr16:82661400-82662800	Flanking Active TSS	Breast Myoepithelial Primary Cells	Breast
5	chr16:82661400-82662800	Flanking Bivalent TSS/Enh	Stomach Smooth Muscle	stomach
6	chr16:82661600-82662600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr16:82661600-82662600	Flanking Active TSS	NHLF	lung
8	chr16:82661600-82662800	Flanking Bivalent TSS/Enh	Adipose Nuclei	Adipose
9	chr16:82661600-82663000	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr16:82661600-82663000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr16:82661600-82663200	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
12	chr16:82661600-82663400	Flanking Active TSS	Skeletal Muscle Male	skeletal muscle
13	chr16:82661600-82663400	Flanking Active TSS	Hela-S3	cervix
14	chr16:82661600-82664000	Flanking Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr16:82661600-82664400	Flanking Active TSS	HUVEC	blood vessel
16	chr16:82661800-82662600	Flanking Bivalent TSS/Enh	HUES6 Cell Line	embryonic stem cell
17	chr16:82661800-82662600	Flanking Active TSS	Fetal Heart	heart
18	chr16:82661800-82662800	Bivalent Enhancer	Fetal Intestine Large	intestine
19	chr16:82661800-82663400	Enhancers	Esophagus	oesophagus
20	chr16:82661800-82663400	Flanking Active TSS	NHDF-Ad	bronchial
21	chr16:82661800-82664400	Flanking Active TSS	Muscle Satellite Cultured Cells	--
22	chr16:82661800-82664400	Flanking Active TSS	NH-A	brain
23	chr16:82661800-82664400	Flanking Active TSS	Osteobl	bone
24	chr16:82662000-82662600	Bivalent Enhancer	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr16:82662000-82662600	Flanking Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
26	chr16:82662000-82662600	Bivalent Enhancer	Brain Germinal Matrix	brain
27	chr16:82662000-82662600	Bivalent/Poised TSS	Brain Hippocampus Middle	brain
28	chr16:82662000-82662600	Bivalent Enhancer	Rectal Smooth Muscle	rectum
29	chr16:82662000-82662800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr16:82662000-82662800	Bivalent Enhancer	iPS DF 19.11 Cell Line	embryonic stem cell
31	chr16:82662000-82663000	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr16:82662000-82663000	Flanking Active TSS	Psoas Muscle	Psoas
33	chr16:82662000-82663200	Bivalent Enhancer	Fetal Stomach	stomach
34	chr16:82662000-82663400	Flanking Active TSS	HSMMtube	muscle
35	chr16:82662000-82664000	Flanking Active TSS	ES-I3 Cell Line	embryonic stem cell
36	chr16:82662000-82664200	Flanking Active TSS	HMEC	breast
37	chr16:82662000-82664600	Flanking Active TSS	NHEK	skin
38	chr16:82662200-82662600	Bivalent Enhancer	Fetal Brain Female	brain
39	chr16:82662200-82662800	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
40	chr16:82662200-82662800	Bivalent Enhancer	Colon Smooth Muscle	Colon
41	chr16:82662200-82662800	Flanking Active TSS	Right Ventricle	heart
42	chr16:82662200-82663200	Flanking Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
43	chr16:82662200-82663400	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
44	chr16:82662200-82663600	Flanking Active TSS	HSMM	muscle
45	chr16:82662200-82666200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr16:82662400-82662600	Flanking Bivalent TSS/Enh	iPS-20b Cell Line	embryonic stem cell
47	chr16:82662400-82662600	Bivalent Enhancer	Brain Cingulate Gyrus	brain
48	chr16:82662400-82662600	Active TSS	Brain Inferior Temporal Lobe	brain
49	chr16:82662400-82662600	Enhancers	Fetal Muscle Trunk	muscle
50	chr16:82662400-82662800	Bivalent Enhancer	H9 Cell Line	embryonic stem cell

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