Variant report

Variant	rs7203371
Chromosome Location	chr16:74807063-74807064
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:74806794..74808718-chr17:60782229..60784294,2	MCF-7	breast:
2	chr16:74801382..74803989-chr16:74806542..74808626,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000265702	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11149764	0.80[EUR][1000 genomes]
rs11149765	0.80[EUR][1000 genomes]
rs4556811	0.85[ASN][1000 genomes]
rs4985358	0.84[ASN][1000 genomes]
rs7185704	0.81[EUR][1000 genomes]
rs7201427	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs8045562	0.80[AMR][1000 genomes]
rs8051846	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916687	chr16:74241238-74896721	Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Strong transcription Transcr. at gene 5' and 3' Genic enhancers Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	102 gene(s)	inside rSNPs	diseases
2	nsv949374	chr16:74466960-75172358	Enhancers Flanking Active TSS Weak transcription Strong transcription Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	96 gene(s)	inside rSNPs	diseases
3	nsv1061095	chr16:74519718-75407020	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	123 gene(s)	inside rSNPs	diseases
4	nsv1061948	chr16:74660609-74882915	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
5	nsv542957	chr16:74660609-74882915	Enhancers Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
6	nsv532560	chr16:74692406-75411912	Enhancers Weak transcription Genic enhancers Flanking Active TSS Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	111 gene(s)	inside rSNPs	diseases
7	nsv517513	chr16:74743736-74812676	Enhancers Weak transcription Bivalent/Poised TSS Genic enhancers Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region	36 gene(s)	inside rSNPs	diseases
8	nsv1058900	chr16:74753819-75005050	Weak transcription Strong transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
9	nsv542958	chr16:74753819-75005050	Weak transcription Bivalent Enhancer Strong transcription Enhancers ZNF genes & repeats Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	40 gene(s)	inside rSNPs	diseases
10	esv3345041	chr16:74756263-75066969	Active TSS Genic enhancers Bivalent/Poised TSS Flanking Active TSS Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	52 gene(s)	inside rSNPs	diseases
11	nsv457520	chr16:74758984-74907440	Bivalent Enhancer Enhancers Flanking Active TSS Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases
12	nsv572976	chr16:74758984-74907440	Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Active TSS Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:74796200-74807400	Weak transcription	A549	lung
2	chr16:74801600-74807600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
3	chr16:74804000-74807400	Weak transcription	Pancreas	Pancrea
4	chr16:74804200-74807400	Weak transcription	Fetal Intestine Small	intestine
5	chr16:74804200-74807400	Weak transcription	Gastric	stomach
6	chr16:74804200-74807400	Weak transcription	Rectal Mucosa Donor 31	rectum
7	chr16:74805600-74807400	Weak transcription	Colonic Mucosa	Colon
8	chr16:74805600-74807400	Enhancers	Fetal Thymus	thymus
9	chr16:74805600-74809000	Active TSS	Brain Angular Gyrus	brain
10	chr16:74806200-74807800	Active TSS	Brain Cingulate Gyrus	brain
11	chr16:74806200-74808800	Active TSS	Brain Inferior Temporal Lobe	brain
12	chr16:74806400-74807800	Weak transcription	Spleen	Spleen
13	chr16:74806400-74808800	Active TSS	Brain Substantia Nigra	brain
14	chr16:74806400-74809000	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
15	chr16:74806600-74807600	Weak transcription	GM12878-XiMat	blood
16	chr16:74806600-74807800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr16:74806600-74807800	Active TSS	Brain Hippocampus Middle	brain
18	chr16:74806600-74809000	Active TSS	Brain Anterior Caudate	brain
19	chr16:74806800-74807200	Weak transcription	Thymus	Thymus
20	chr16:74806800-74807400	Active TSS	Stomach Mucosa	stomach
21	chr16:74807000-74807400	Active TSS	iPS-15b Cell Line	embryonic stem cell
22	chr16:74807000-74808000	Flanking Active TSS	Hela-S3	cervix

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