Variant report

Variant	rs7206737
Chromosome Location	chr16:69490075-69490076
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr16:69487928..69489790-chr16:69489906..69492156,2	MCF-7	breast:
2	chr16:69489637..69491395-chr16:69495888..69498592,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000260108	Chromatin interaction

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs11075720	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs153058	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs246132	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs246138	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs246140	0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs246142	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs246143	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs246144	0.91[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs246148	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs3743670	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4783708	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6499227	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7185800	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8064195	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs862349	0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1064808	chr16:69271190-69552951	Weak transcription Active TSS Genic enhancers Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
2	nsv542940	chr16:69271190-69552951	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	72 gene(s)	inside rSNPs	diseases
3	nsv431514	chr16:69428599-69581699	Strong transcription Enhancers Flanking Active TSS Weak transcription Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr16:69459400-69500600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr16:69459600-69499000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
3	chr16:69466200-69496600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr16:69470600-69492400	Weak transcription	Fetal Intestine Large	intestine
5	chr16:69473400-69501600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr16:69473800-69499600	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr16:69478200-69497800	Weak transcription	Brain Cingulate Gyrus	brain
8	chr16:69478400-69496400	Weak transcription	Gastric	stomach
9	chr16:69478400-69498400	Weak transcription	Colonic Mucosa	Colon
10	chr16:69478400-69503200	Weak transcription	Spleen	Spleen
11	chr16:69479000-69497000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr16:69479200-69493000	Weak transcription	NH-A	brain
13	chr16:69479200-69497600	Weak transcription	Brain Angular Gyrus	brain
14	chr16:69479200-69501400	Weak transcription	Aorta	Aorta
15	chr16:69479400-69497400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
16	chr16:69479400-69497800	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
17	chr16:69479400-69498800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
18	chr16:69479400-69503600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr16:69479600-69517600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
20	chr16:69479800-69505000	Weak transcription	Rectal Smooth Muscle	rectum
21	chr16:69480600-69494600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr16:69480600-69497000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr16:69480600-69501200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
24	chr16:69481200-69498800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr16:69481400-69495600	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr16:69481400-69503800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
27	chr16:69481600-69493200	Weak transcription	Left Ventricle	heart
28	chr16:69481600-69495600	Weak transcription	Fetal Muscle Trunk	muscle
29	chr16:69481600-69496400	Weak transcription	Lung	lung
30	chr16:69481600-69500800	Weak transcription	Ovary	ovary
31	chr16:69482800-69494200	Weak transcription	Duodenum Smooth Muscle	Duodenum
32	chr16:69482800-69500800	Weak transcription	Colon Smooth Muscle	Colon
33	chr16:69483000-69491800	Weak transcription	Brain Inferior Temporal Lobe	brain
34	chr16:69483000-69492800	Weak transcription	Osteobl	bone
35	chr16:69483000-69496000	Weak transcription	Fetal Brain Male	brain
36	chr16:69483000-69496400	Weak transcription	Fetal Muscle Leg	muscle
37	chr16:69483000-69496400	Weak transcription	Stomach Smooth Muscle	stomach
38	chr16:69483000-69496400	Weak transcription	Thymus	Thymus
39	chr16:69483000-69496400	Strong transcription	Hela-S3	cervix
40	chr16:69483000-69498800	Weak transcription	NHLF	lung
41	chr16:69483000-69499000	Weak transcription	Pancreas	Pancrea
42	chr16:69483000-69501400	Weak transcription	Psoas Muscle	Psoas
43	chr16:69483000-69503600	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr16:69483000-69505600	Weak transcription	Right Ventricle	heart
45	chr16:69483200-69497800	Weak transcription	Brain Anterior Caudate	brain
46	chr16:69483400-69491000	Weak transcription	Liver	Liver
47	chr16:69483400-69496400	Weak transcription	H1 Cell Line	embryonic stem cell
48	chr16:69483400-69496400	Weak transcription	HSMMtube	muscle
49	chr16:69483400-69497800	Weak transcription	Fetal Brain Female	brain
50	chr16:69483600-69490400	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--

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