Variant report

Variant	rs7207609
Chromosome Location	chr17:67067441-67067442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs11652530	0.84[EUR][1000 genomes]
rs12162136	0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12453914	0.84[EUR][1000 genomes]
rs12601388	0.82[EUR][1000 genomes]
rs12939282	0.82[EUR][1000 genomes]
rs12940298	0.84[EUR][1000 genomes]
rs12952117	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs16973567	0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs1990335	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2041170	0.84[EUR][1000 genomes]
rs2041171	0.83[EUR][1000 genomes]
rs2190900	0.83[EUR][1000 genomes]
rs3744489	0.84[EUR][1000 genomes]
rs4141177	0.85[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4334355	0.92[EUR][1000 genomes]
rs4603621	0.92[EUR][1000 genomes]
rs4968838	0.92[EUR][1000 genomes]
rs4968839	0.92[EUR][1000 genomes]
rs5025273	0.89[EUR][1000 genomes]
rs6501183	0.91[EUR][1000 genomes]
rs7208586	0.92[EUR][1000 genomes]
rs7213831	0.91[EUR][1000 genomes]
rs7214079	0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs7503217	0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs8064595	0.91[EUR][1000 genomes]
rs8077252	0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs8078314	0.84[EUR][1000 genomes]
rs8079981	0.91[EUR][1000 genomes]
rs9303012	0.91[EUR][1000 genomes]
rs976698	0.83[EUR][1000 genomes]
rs9916693	0.91[EUR][1000 genomes]
rs997781	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1067334	chr17:66695039-67221585	Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Enhancers Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
2	nsv543411	chr17:66695039-67221585	Flanking Active TSS Strong transcription Enhancers Weak transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	16 gene(s)	inside rSNPs	diseases
3	nsv833526	chr17:66980758-67137034	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	6 gene(s)	inside rSNPs	diseases
4	nsv1066998	chr17:67060038-67090475	Weak transcription Enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
5	nsv908705	chr17:67061898-67112456	Weak transcription Enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Active TSS	TF binding region Chromatin interactive region lncRNA miRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:67041400-67072600	Weak transcription	Skeletal Muscle Female	skeletal muscle
2	chr17:67056200-67075200	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr17:67057800-67077600	Weak transcription	Fetal Brain Male	brain
4	chr17:67058400-67071600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
5	chr17:67059600-67069600	Weak transcription	Adipose Nuclei	Adipose
6	chr17:67060000-67070000	Weak transcription	Ovary	ovary
7	chr17:67062800-67075800	Weak transcription	Left Ventricle	heart
8	chr17:67063400-67070200	Enhancers	HepG2	liver
9	chr17:67063600-67070600	Weak transcription	Liver	Liver
10	chr17:67065600-67076400	Weak transcription	Esophagus	oesophagus
11	chr17:67065600-67088600	Weak transcription	Pancreas	Pancrea
12	chr17:67065800-67076400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr17:67066000-67070800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr17:67066000-67078800	Weak transcription	NHDF-Ad	bronchial
15	chr17:67066400-67067800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
16	chr17:67066600-67067600	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr17:67066600-67067600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr17:67066600-67067600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
19	chr17:67066600-67067600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr17:67066600-67067600	Enhancers	Fetal Thymus	thymus
21	chr17:67066600-67067600	Enhancers	Spleen	Spleen
22	chr17:67066600-67067800	Enhancers	Primary B cells from peripheral blood	blood
23	chr17:67066600-67067800	Enhancers	Primary T cells from cord blood	blood
24	chr17:67066600-67067800	Enhancers	Primary T cells fromperipheralblood	blood
25	chr17:67066800-67067600	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr17:67066800-67067600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr17:67066800-67067600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
28	chr17:67066800-67067600	Enhancers	Lung	lung
29	chr17:67066800-67067600	Enhancers	Sigmoid Colon	Sigmoid Colon
30	chr17:67066800-67067600	Enhancers	Stomach Mucosa	stomach
31	chr17:67066800-67067800	Enhancers	Primary T helper cells fromperipheralblood	blood
32	chr17:67067000-67067600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
33	chr17:67067200-67099600	Weak transcription	Gastric	stomach
34	chr17:67067200-67111600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr17:67067400-67067600	Enhancers	Right Atrium	heart
36	chr17:67067400-67067600	Enhancers	Monocytes-CD14+_RO01746	blood
37	chr17:67067400-67067800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
38	chr17:67067400-67068000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood

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