Variant report

Variant	rs7209109
Chromosome Location	chr17:45391650-45391651
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:45386092..45388850-chr17:45390487..45392389,2	K562	blood:

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs11655943	0.86[ASN][1000 genomes]
rs12600603	0.84[ASN][1000 genomes]
rs12603582	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3809863	0.86[ASN][1000 genomes]
rs9303533	0.86[ASN][1000 genomes]
rs9674670	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1062983	chr17:45030095-45789543	Strong transcription Active TSS Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	70 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:55 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:45357200-45398000	Weak transcription	Psoas Muscle	Psoas
2	chr17:45371400-45393000	Weak transcription	Dnd41	blood
3	chr17:45372400-45394400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr17:45374000-45392800	Weak transcription	Brain Substantia Nigra	brain
5	chr17:45380200-45392800	Weak transcription	Brain Hippocampus Middle	brain
6	chr17:45381400-45392600	Weak transcription	Liver	Liver
7	chr17:45381800-45392800	Weak transcription	Left Ventricle	heart
8	chr17:45382800-45394600	Weak transcription	Small Intestine	intestine
9	chr17:45382800-45400800	Weak transcription	Lung	lung
10	chr17:45383600-45392400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr17:45383600-45392600	Weak transcription	Adipose Nuclei	Adipose
12	chr17:45383800-45392000	Weak transcription	HSMM	muscle
13	chr17:45383800-45392000	Weak transcription	NH-A	brain
14	chr17:45383800-45392200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr17:45384000-45392000	Weak transcription	NHLF	lung
16	chr17:45385000-45392600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr17:45385200-45392000	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr17:45387800-45392600	Weak transcription	K562	blood
19	chr17:45387800-45392800	Weak transcription	Fetal Intestine Large	intestine
20	chr17:45388000-45392200	Weak transcription	Hela-S3	cervix
21	chr17:45388200-45392600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr17:45388200-45393000	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr17:45388400-45392200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
24	chr17:45388400-45392200	Weak transcription	NHDF-Ad	bronchial
25	chr17:45388400-45398000	Weak transcription	Fetal Muscle Trunk	muscle
26	chr17:45388600-45392600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
27	chr17:45388800-45392000	Weak transcription	Osteobl	bone
28	chr17:45388800-45392200	Weak transcription	HSMMtube	muscle
29	chr17:45388800-45392600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
30	chr17:45388800-45400800	Weak transcription	Aorta	Aorta
31	chr17:45389000-45392400	Weak transcription	Colon Smooth Muscle	Colon
32	chr17:45389000-45392800	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr17:45389200-45392800	Weak transcription	Fetal Stomach	stomach
34	chr17:45389400-45391800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr17:45389800-45392600	Weak transcription	Fetal Muscle Leg	muscle
36	chr17:45389800-45392800	Weak transcription	Stomach Smooth Muscle	stomach
37	chr17:45390200-45392600	Weak transcription	Fetal Heart	heart
38	chr17:45390200-45392800	Weak transcription	Rectal Mucosa Donor 31	rectum
39	chr17:45390400-45393000	Weak transcription	Duodenum Mucosa	Duodenum
40	chr17:45390400-45393000	Enhancers	Placenta	Placenta
41	chr17:45390400-45394400	Enhancers	HUVEC	blood vessel
42	chr17:45391000-45391800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
43	chr17:45391000-45393000	Genic enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
44	chr17:45391200-45392800	Weak transcription	Fetal Intestine Small	intestine
45	chr17:45391200-45393000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
46	chr17:45391200-45393600	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
47	chr17:45391200-45394200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr17:45391200-45394600	Enhancers	Muscle Satellite Cultured Cells	--
49	chr17:45391200-45394800	Enhancers	Breast Myoepithelial Primary Cells	Breast
50	chr17:45391200-45400800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

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