Variant report

Variant	rs7210422
Chromosome Location	chr17:63088512-63088513
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12601011	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs16959655	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs56148237	0.81[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs73341897	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9892236	1.00[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066765	chr17:62649313-63124303	Flanking Active TSS Active TSS Weak transcription Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	98 gene(s)	inside rSNPs	diseases
2	nsv530764	chr17:62939944-63278472	Weak transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
3	nsv575872	chr17:63084995-63111452	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	esv3400477	chr17:63088063-63088618	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:63082200-63096400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr17:63082800-63095400	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr17:63082800-63095400	Weak transcription	Small Intestine	intestine
4	chr17:63084800-63088600	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr17:63085200-63088600	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr17:63087200-63089400	Enhancers	A549	lung
7	chr17:63088000-63089000	Enhancers	Stomach Mucosa	stomach
8	chr17:63088200-63088800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
9	chr17:63088200-63089000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr17:63088400-63088600	Enhancers	ES-I3 Cell Line	embryonic stem cell
11	chr17:63088400-63088600	Bivalent Enhancer	Muscle Satellite Cultured Cells	--
12	chr17:63088400-63088800	Enhancers	Hela-S3	cervix
13	chr17:63088400-63088800	Enhancers	HepG2	liver
14	chr17:63088400-63089400	Enhancers	Duodenum Mucosa	Duodenum

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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