Variant report

Variant	rs7210879
Chromosome Location	chr17:17096256-17096257
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:17089905..17092856-chr17:17094714..17097551,4	K562	blood:
2	chr17:17096019..17098755-chr17:17100271..17101985,2	K562	blood:
3	chr17:17096071..17098801-chr17:17107731..17110608,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000179598	Chromatin interaction

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs4985740	0.82[AMR][1000 genomes]
rs7207485	0.82[AMR][1000 genomes]
rs7217091	0.80[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833380	chr17:17088416-17241206	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:89 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17076600-17104600	Weak transcription	K562	blood
2	chr17:17086400-17104800	Weak transcription	Brain Substantia Nigra	brain
3	chr17:17086400-17106600	Weak transcription	Colonic Mucosa	Colon
4	chr17:17089600-17096600	Weak transcription	Primary monocytes fromperipheralblood	blood
5	chr17:17090200-17107000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
6	chr17:17090200-17107400	Weak transcription	Small Intestine	intestine
7	chr17:17090800-17106600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
8	chr17:17090800-17106600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
9	chr17:17090800-17107200	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
10	chr17:17091200-17104400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
11	chr17:17091400-17104000	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr17:17091800-17107600	Weak transcription	Rectal Mucosa Donor 31	rectum
13	chr17:17092200-17105400	Weak transcription	Gastric	stomach
14	chr17:17092400-17104200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
15	chr17:17092400-17105600	Weak transcription	Brain Germinal Matrix	brain
16	chr17:17093000-17104800	Weak transcription	Hela-S3	cervix
17	chr17:17093600-17102400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
18	chr17:17093600-17103400	Weak transcription	Fetal Thymus	thymus
19	chr17:17093600-17104400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
20	chr17:17093600-17107400	Weak transcription	Dnd41	blood
21	chr17:17093600-17108400	Weak transcription	Thymus	Thymus
22	chr17:17093800-17096600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
23	chr17:17093800-17096600	Enhancers	Brain Anterior Caudate	brain
24	chr17:17093800-17097200	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
25	chr17:17093800-17103400	Weak transcription	Primary T helper cells fromperipheralblood	blood
26	chr17:17093800-17104000	Weak transcription	Fetal Intestine Small	intestine
27	chr17:17093800-17104200	Weak transcription	Primary T cells fromperipheralblood	blood
28	chr17:17093800-17105400	Weak transcription	Pancreas	Pancrea
29	chr17:17093800-17105600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
30	chr17:17093800-17105600	Weak transcription	Esophagus	oesophagus
31	chr17:17093800-17107400	Weak transcription	Sigmoid Colon	Sigmoid Colon
32	chr17:17093800-17107600	Weak transcription	Monocytes-CD14+_RO01746	blood
33	chr17:17094000-17103400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
34	chr17:17094000-17104600	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr17:17094000-17107200	Weak transcription	Aorta	Aorta
36	chr17:17094200-17100600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr17:17094200-17100600	Weak transcription	Fetal Lung	lung
38	chr17:17094200-17104800	Weak transcription	HepG2	liver
39	chr17:17094400-17103200	Weak transcription	Primary T cells from cord blood	blood
40	chr17:17094600-17096600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
41	chr17:17094800-17096800	Enhancers	Primary B cells from cord blood	blood
42	chr17:17094800-17100200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
43	chr17:17095000-17100400	Weak transcription	NHEK	skin
44	chr17:17095000-17104600	Weak transcription	Primary hematopoietic stem cells	blood
45	chr17:17095000-17104800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
46	chr17:17095000-17104800	Weak transcription	Right Ventricle	heart
47	chr17:17095000-17105600	Weak transcription	Right Atrium	heart
48	chr17:17095200-17096800	Enhancers	Primary B cells from peripheral blood	blood
49	chr17:17095200-17099800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
50	chr17:17095200-17104600	Weak transcription	Lung	lung

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