Variant report

Variant	rs7211156
Chromosome Location	chr17:59467853-59467854
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:38)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:38 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59079015..59081334-chr17:59466841..59468805,2	MCF-7	breast:
2	chr17:58797909..58798751-chr17:59467007..59468393,4	MCF-7	breast:
3	chr17:59093582..59095463-chr17:59467491..59469667,2	MCF-7	breast:
4	chr17:59415713..59496229-chr20:49401322..49431802,760	MCF-7	breast:
5	chr17:59391608..59392606-chr17:59466542..59468202,7	MCF-7	breast:
6	chr17:59465921..59468954-chr20:49409825..49412853,123	MCF-7	breast:
7	chr17:59467368..59468208-chr8:100108099..100109078,2	MCF-7	breast:
8	chr17:59467200..59468003-chr20:49416568..49417466,2	MCF-7	breast:
9	chr17:59402205..59402841-chr17:59467198..59467908,2	MCF-7	breast:
10	chr17:59394373..59396305-chr17:59466610..59468021,22	MCF-7	breast:
11	chr17:59466765..59468010-chr20:49406759..49407742,14	MCF-7	breast:
12	chr17:59077399..59079421-chr17:59466305..59468225,3	MCF-7	breast:
13	chr17:59467040..59470033-chr20:54153302..54156238,2	MCF-7	breast:
14	chr17:59467062..59467925-chr17:59488240..59489103,2	MCF-7	breast:
15	chr17:59078386..59080667-chr17:59467107..59468511,11	MCF-7	breast:
16	chr17:59119795..59120358-chr17:59466990..59467876,3	MCF-7	breast:
17	chr17:59395164..59395737-chr17:59467118..59467953,2	MCF-7	breast:
18	chr17:59467001..59468511-chr17:59486417..59487797,11	MCF-7	breast:
19	chr17:59078398..59078960-chr17:59467229..59467896,2	MCF-7	breast:
20	chr17:59431944..59433160-chr17:59466956..59468905,13	MCF-7	breast:
21	chr17:59466330..59468219-chr20:49409954..49412575,46	MCF-7	breast:
22	chr17:59467052..59468237-chr20:49406919..49407814,7	MCF-7	breast:
23	chr17:59079488..59080256-chr17:59466734..59468037,4	MCF-7	breast:
24	chr17:59467424..59470121-chr20:49376913..49378650,2	MCF-7	breast:
25	chr17:56708937..56709569-chr17:59467367..59468274,2	MCF-7	breast:
26	chr17:59466995..59467902-chr17:59475788..59476882,3	MCF-7	breast:
27	chr1:201087077..201089535-chr17:59466974..59468623,2	MCF-7	breast:
28	chr17:59466830..59467981-chr17:59489440..59490777,4	MCF-7	breast:
29	chr17:59467763..59469929-chr8:81084846..81086719,2	MCF-7	breast:
30	chr17:59080842..59083779-chr17:59465720..59468268,2	MCF-7	breast:
31	chr17:59465737..59468084-chr20:49346733..49349334,3	MCF-7	breast:
32	chr17:59414017..59415414-chr17:59467004..59467916,4	MCF-7	breast:
33	chr17:59047255..59049239-chr17:59467442..59469111,2	MCF-7	breast:
34	chr17:59417320..59418298-chr17:59467084..59468178,3	MCF-7	breast:
35	chr17:59466731..59469556-chr7:94964325..94965826,2	MCF-7	breast:
36	chr17:59426459..59427514-chr17:59467085..59467900,4	MCF-7	breast:
37	chr17:59048409..59049576-chr17:59466942..59467924,6	MCF-7	breast:
38	chr17:59447417..59500105-chr20:49391742..49424382,639	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000212195	Chromatin interaction
ENSG00000124243	Chromatin interaction
ENSG00000267280	Chromatin interaction
ENSG00000124171	Chromatin interaction
ENSG00000141376	Chromatin interaction

Extended variants
information (count: 24 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs1010270	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs10515196	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs16945174	1.00[JPT][hapmap]
rs16945232	1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[ASN][1000 genomes]
rs16945233	1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs3785838	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[ASN][1000 genomes]
rs4459608	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs55663968	0.89[AFR][1000 genomes]
rs61037824	0.96[ASN][1000 genomes]
rs61068714	0.81[AFR][1000 genomes]
rs7215875	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs734375	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs73991903	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73991905	1.00[ASN][1000 genomes]
rs73991906	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73993479	0.96[ASN][1000 genomes]
rs758600	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[YRI][hapmap];0.82[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1065939	chr17:59283350-59517730	Enhancers Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	331 gene(s)	inside rSNPs	diseases
2	nsv833505	chr17:59323466-59518007	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	326 gene(s)	inside rSNPs	diseases
3	nsv833506	chr17:59362377-59562984	Bivalent Enhancer Enhancers Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
4	nsv518130	chr17:59456589-59491281	Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	265 gene(s)	inside rSNPs	diseases
5	esv1796927	chr17:59460119-59495319	Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Enhancers Bivalent Enhancer Weak transcription Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	270 gene(s)	inside rSNPs	diseases
6	nsv908663	chr17:59464069-59521310	Bivalent Enhancer Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Weak transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	278 gene(s)	inside rSNPs	diseases
7	nsv908664	chr17:59465697-59491030	Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Enhancers Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	261 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:46 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59438200-59470800	Weak transcription	Esophagus	oesophagus
2	chr17:59444600-59473400	Weak transcription	Right Atrium	heart
3	chr17:59447000-59473400	Weak transcription	Pancreas	Pancrea
4	chr17:59459200-59469400	Weak transcription	Brain Hippocampus Middle	brain
5	chr17:59462400-59471600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
6	chr17:59462600-59470800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr17:59463200-59469400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr17:59464000-59471000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr17:59464000-59474000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr17:59465400-59468000	Bivalent Enhancer	Fetal Muscle Trunk	muscle
11	chr17:59465600-59468400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr17:59466600-59469200	Bivalent Enhancer	Fetal Stomach	stomach
13	chr17:59466600-59469400	Enhancers	Fetal Lung	lung
14	chr17:59466800-59468000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr17:59466800-59468200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr17:59466800-59468200	Enhancers	Lung	lung
17	chr17:59466800-59468600	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
18	chr17:59466800-59468600	Enhancers	NHLF	lung
19	chr17:59466800-59469400	Genic enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr17:59467000-59468000	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
21	chr17:59467200-59468000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr17:59467200-59468000	Enhancers	Fetal Heart	heart
23	chr17:59467200-59468200	Enhancers	Fetal Kidney	kidney
24	chr17:59467200-59468200	Enhancers	Placenta	Placenta
25	chr17:59467200-59468200	Flanking Active TSS	HepG2	liver
26	chr17:59467400-59468400	Bivalent Enhancer	Skeletal Muscle Male	skeletal muscle
27	chr17:59467400-59469400	Weak transcription	Brain Inferior Temporal Lobe	brain
28	chr17:59467400-59470600	Genic enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
29	chr17:59467400-59470800	Weak transcription	Brain Anterior Caudate	brain
30	chr17:59467400-59470800	Weak transcription	Osteobl	bone
31	chr17:59467400-59471800	Weak transcription	Brain Cingulate Gyrus	brain
32	chr17:59467400-59474000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr17:59467600-59468000	Weak transcription	Right Ventricle	heart
34	chr17:59467600-59468600	Weak transcription	Gastric	stomach
35	chr17:59467600-59471000	Weak transcription	Ovary	ovary
36	chr17:59467600-59471200	Weak transcription	Brain Substantia Nigra	brain
37	chr17:59467600-59471400	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
38	chr17:59467600-59472800	Weak transcription	Adipose Nuclei	Adipose
39	chr17:59467800-59468400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
40	chr17:59467800-59468800	Weak transcription	Spleen	Spleen
41	chr17:59467800-59471000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
42	chr17:59467800-59471000	Weak transcription	Muscle Satellite Cultured Cells	--
43	chr17:59467800-59471000	Weak transcription	A549	lung
44	chr17:59467800-59471200	Weak transcription	NHDF-Ad	bronchial
45	chr17:59467800-59472800	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
46	chr17:59467800-59473800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell

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