Variant report

Variant	rs7211862
Chromosome Location	chr17:20937617-20937618
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:20930469..20933824-chr17:20936944..20940043,3	MCF-7	breast:
2	chr17:20935544..20938386-chr17:21136590..21139046,2	K562	blood:
3	chr17:20934273..20942906-chr17:20943761..20949798,22	MCF-7	breast:
4	chr17:20936833..20939628-chr17:20939684..20941380,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000124422	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs2291034	0.88[YRI][hapmap]
rs7212424	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7216030	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7222265	1.00[YRI][hapmap];0.96[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7226285	1.00[YRI][hapmap];0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv949097	chr17:20801739-21406355	Genic enhancers Enhancers Strong transcription Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	71 gene(s)	inside rSNPs	diseases
2	nsv529759	chr17:20839079-21529632	Weak transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	75 gene(s)	inside rSNPs	diseases
3	nsv827917	chr17:20896100-20961777	Flanking Active TSS Enhancers Genic enhancers Weak transcription Strong transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:20903400-20940000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr17:20903600-20938400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr17:20923000-20943800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr17:20931800-20940200	Enhancers	Brain Cingulate Gyrus	brain
5	chr17:20932000-20938000	Enhancers	Brain Hippocampus Middle	brain
6	chr17:20932200-20937800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr17:20932200-20941400	Genic enhancers	A549	lung
8	chr17:20932400-20938000	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr17:20932600-20937800	Weak transcription	H9 Cell Line	embryonic stem cell
10	chr17:20932600-20937800	Enhancers	Adipose Nuclei	Adipose
11	chr17:20932600-20937800	Enhancers	Brain Anterior Caudate	brain
12	chr17:20932600-20940400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
13	chr17:20932800-20941800	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
14	chr17:20933400-20938800	Strong transcription	Hela-S3	cervix
15	chr17:20934000-20942800	Genic enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr17:20934000-20943200	Weak transcription	Esophagus	oesophagus
17	chr17:20934600-20937800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr17:20934600-20940000	Enhancers	ES-I3 Cell Line	embryonic stem cell
19	chr17:20935000-20938000	Enhancers	HSMMtube	muscle
20	chr17:20935000-20938200	Enhancers	Psoas Muscle	Psoas
21	chr17:20935000-20938400	Strong transcription	Fetal Intestine Large	intestine
22	chr17:20935000-20938800	Enhancers	Spleen	Spleen
23	chr17:20935000-20940600	Enhancers	Left Ventricle	heart
24	chr17:20935000-20941000	Enhancers	Right Ventricle	heart
25	chr17:20935200-20938400	Enhancers	Ovary	ovary
26	chr17:20935200-20943800	Enhancers	Cortex derived primary cultured neurospheres	brain
27	chr17:20935400-20937800	Weak transcription	Fetal Kidney	kidney
28	chr17:20935400-20938200	Genic enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
29	chr17:20935400-20938400	Enhancers	Lung	lung
30	chr17:20935400-20938800	Enhancers	Brain Germinal Matrix	brain
31	chr17:20935400-20939000	Enhancers	Placenta Amnion	Placenta Amnion
32	chr17:20935400-20939200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
33	chr17:20935600-20940000	Enhancers	Brain Inferior Temporal Lobe	brain
34	chr17:20935600-20940200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr17:20935600-20942200	Enhancers	Fetal Brain Male	brain
36	chr17:20935800-20937800	Genic enhancers	Fetal Thymus	thymus
37	chr17:20935800-20938000	Weak transcription	HUES64 Cell Line	embryonic stem cell
38	chr17:20935800-20938000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
39	chr17:20935800-20938000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
40	chr17:20935800-20938000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr17:20935800-20939000	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr17:20935800-20939400	Enhancers	Fetal Lung	lung
43	chr17:20935800-20940600	Enhancers	Fetal Heart	heart
44	chr17:20936000-20937800	Enhancers	NHDF-Ad	bronchial
45	chr17:20936000-20939600	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
46	chr17:20936200-20937800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
47	chr17:20936200-20937800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
48	chr17:20936200-20938000	Genic enhancers	Fetal Stomach	stomach
49	chr17:20936200-20938600	Enhancers	Fetal Brain Female	brain
50	chr17:20936200-20941600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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