Variant report

Variant	rs7213335
Chromosome Location	chr17:16947126-16947127
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:16944536..16947207-chr17:17109103..17111480,2	MCF-7	breast:
2	chr17:16945686..16947847-chr3:44621097..44624084,2	MCF-7	breast:
3	chr17:16917707..16920531-chr17:16944662..16947361,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214820	Chromatin interaction
ENSG00000179598	Chromatin interaction
ENSG00000260328	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs16961406	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv543231	chr17:16926227-16950644	Weak transcription Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	esv3355439	chr17:16944752-16947600	Flanking Active TSS Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:16945000-16947200	Active TSS	Duodenum Smooth Muscle	Duodenum
2	chr17:16945000-16948200	Active TSS	Pancreatic Islets	Pancreatic Islet
3	chr17:16945200-16947200	Active TSS	ES-WA7 Cell Line	embryonic stem cell
4	chr17:16945200-16947200	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr17:16945200-16947200	Active TSS	Rectal Smooth Muscle	rectum
6	chr17:16945200-16947400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr17:16945200-16947400	Active TSS	HUES64 Cell Line	embryonic stem cell
8	chr17:16945200-16947400	Active TSS	iPS-15b Cell Line	embryonic stem cell
9	chr17:16945200-16947600	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
10	chr17:16945200-16947600	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
11	chr17:16945200-16947600	Active TSS	Fetal Kidney	kidney
12	chr17:16945200-16947600	Active TSS	Gastric	stomach
13	chr17:16945200-16947600	Active TSS	Pancreas	Pancrea
14	chr17:16945200-16947800	Active TSS	HUES48 Cell Line	embryonic stem cell
15	chr17:16945200-16948400	Active TSS	Aorta	Aorta
16	chr17:16945200-16948400	Active TSS	Esophagus	oesophagus
17	chr17:16945400-16947200	Active TSS	Ganglion Eminence derived primary cultured neurospheres	brain
18	chr17:16945400-16947200	Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr17:16945400-16947200	Active TSS	Brain Angular Gyrus	brain
20	chr17:16945400-16947200	Active TSS	Brain Hippocampus Middle	brain
21	chr17:16945400-16947200	Active TSS	Brain Substantia Nigra	brain
22	chr17:16945400-16947200	Active TSS	Fetal Stomach	stomach
23	chr17:16945400-16947400	Active TSS	Brain Inferior Temporal Lobe	brain
24	chr17:16945400-16947400	Active TSS	Lung	lung
25	chr17:16945400-16947400	Active TSS	NH-A	brain
26	chr17:16945400-16947400	Active TSS	NHEK	skin
27	chr17:16945400-16947600	Active TSS	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr17:16945400-16947600	Active TSS	Fetal Intestine Large	intestine
29	chr17:16945400-16947600	Active TSS	Fetal Intestine Small	intestine
30	chr17:16945400-16947600	Active TSS	A549	lung
31	chr17:16945400-16947600	Active TSS	Hela-S3	cervix
32	chr17:16945400-16948000	Active TSS	NHLF	lung
33	chr17:16945400-16948200	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
34	chr17:16945400-16948200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
35	chr17:16945400-16948200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
36	chr17:16945400-16948200	Active TSS	Right Atrium	heart
37	chr17:16945400-16948200	Active TSS	NHDF-Ad	bronchial
38	chr17:16945400-16948600	Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
39	chr17:16945400-16948600	Active TSS	Breast Myoepithelial Primary Cells	Breast
40	chr17:16945400-16948600	Active TSS	HSMMtube	muscle
41	chr17:16945400-16948800	Active TSS	HSMM	muscle
42	chr17:16945600-16947400	Active TSS	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr17:16945600-16948400	Active TSS	HMEC	breast
44	chr17:16945600-16948800	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
45	chr17:16946000-16947600	Active TSS	Placenta Amnion	Placenta Amnion
46	chr17:16946200-16947200	Bivalent/Poised TSS	HepG2	liver
47	chr17:16946200-16947400	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr17:16946200-16947800	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
49	chr17:16946200-16948200	Flanking Active TSS	Primary hematopoietic stem cells	blood
50	chr17:16946200-16948200	Active TSS	GM12878-XiMat	blood

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