Variant report

Variant	rs7213903
Chromosome Location	chr17:17188423-17188424
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:1)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr17:17188379-17188429	GM12878	blood:	n/a
2	chr17:17188379-17188429	LNCaP	prostate:	n/a
3	chr17:17188379-17188429	GM12891	blood:	n/a
4	chr17:17188379-17188429	HPAEpiC	pulmonary alveolar:	n/a
5	chr17:17188379-17188429	Caco-2	colon:	n/a
6	chr17:17188379-17188429	PrEC	prostate:	n/a
7	chr17:17188379-17188429	K562	blood:	n/a
8	chr17:17188379-17188429	GM06990	blood:	n/a
9	chr17:17188379-17188429	HCM	heart:	n/a
10	chr17:17188379-17188429	MCF-7	breast:	n/a
11	chr17:17188379-17188429	PANC-1	pancreas:	n/a
12	chr17:17188379-17188429	SAEC	small airway:	n/a
13	chr17:17188379-17188429	SK-N-SH	brain:	n/a
14	chr17:17188379-17188429	GM12892	blood:	n/a
15	chr17:17188379-17188429	IMR90	lung:	fetal
16	chr17:17188379-17188429	U87	brain:	n/a
17	chr17:17188379-17188429	HL-60	blood:	n/a
18	chr17:17188379-17188429	NB4	blood:	n/a
19	chr17:17188379-17188429	Jurkat	blood:	n/a
20	chr17:17188379-17188429	NT2-D1	testis:	n/a
21	chr17:17188379-17188429	HIPEpiC	eye:	n/a
22	chr17:17188379-17188429	MCF10A-Er-Src	breast:	n/a
23	chr17:17188379-17188429	HUVEC	blood vessel:	n/a
24	chr17:17188379-17188429	AG04449	skin:	fetal
25	chr17:17188379-17188429	PFSK-1	brain:	n/a
26	chr17:17188379-17188429	ovcar-3	ovarian:	n/a
27	chr17:17188379-17188429	AoSMC	blood vessel:	n/a
28	chr17:17188379-17188429	HRE	kidney:	n/a
29	chr17:17188379-17188429	RPTEC	kidney:	n/a
30	chr17:17188379-17188429	HCF	heart:	n/a
31	chr17:17188379-17188429	NHBE	bronchial:	n/a
32	chr17:17188379-17188429	AG09319	gingival:	n/a
33	chr17:17188379-17188429	AG04450	lung:	fetal
34	chr17:17188379-17188429	HCT-116	colon:	n/a
35	chr17:17188379-17188429	HRPEpiC	eye:	n/a
36	chr17:17188379-17188429	AG10803	skin:	n/a
37	chr17:17188379-17188429	HEEpiC	esophagus:	n/a
38	chr17:17188379-17188429	SK-N-MC	brain:	n/a
39	chr17:17188379-17188429	BJ	skin:	n/a
40	chr17:17188379-17188429	NHDF-neo	bronchial:	n/a
41	chr17:17188379-17188429	HNPCEpiC	eye:	n/a
42	chr17:17188379-17188429	A549	lung:	n/a
43	chr17:17188379-17188429	HRCEpiC	kidney:	n/a
44	chr17:17188379-17188429	ECC-1	luminal epithelium:	n/a
45	chr17:17188379-17188429	ProgFib	skin:	n/a
46	chr17:17188379-17188429	GM19239	blood:	n/a
47	chr17:17188379-17188429	HEK293	kidney:	embryo
48	chr17:17188379-17188429	HMEC	breast:	n/a
49	chr17:17188379-17188429	CMK	blood:	n/a
50	chr17:17188379-17188429	AG09309	skin:	n/a

(count:1 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:17187827..17189746-chr17:17208127..17210298,2	MCF-7	breast:

No data

Variant related genes	Relation type
COPS3	CpG island

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs6502567	1.00[AMR][1000 genomes]
rs7213265	1.00[AMR][1000 genomes]
rs8072407	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833380	chr17:17088416-17241206	Strong transcription Flanking Active TSS Weak transcription Enhancers Genic enhancers Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	21 gene(s)	inside rSNPs	diseases
2	nsv1065811	chr17:17104760-17225204	Flanking Active TSS Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv833382	chr17:17124329-17305683	Genic enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
4	nsv469777	chr17:17127385-17272698	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
5	nsv482546	chr17:17127385-17272698	Weak transcription Active TSS Enhancers Strong transcription Genic enhancers Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	19 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:17185600-17189400	Weak transcription	HepG2	liver

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