Variant report

Variant	rs7215499
Chromosome Location	chr17:66397129-66397130
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr17:66283412..66291453-chr17:66391949..66401713,36	MCF-7	breast:
2	chr17:66285328..66292038-chr17:66391246..66397817,23	MCF-7	breast:

Variant related genes	Relation type
ENSG00000141337	Chromatin interaction
ENSG00000108932	Chromatin interaction

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10468443	0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11650971	0.88[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11654682	0.88[EUR][1000 genomes]
rs11654993	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11654995	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11655081	1.00[CEU][hapmap];0.82[EUR][1000 genomes]
rs11657775	0.81[JPT][hapmap]
rs16972924	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.85[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28483915	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs28711365	0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57451312	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57873715	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs60617109	0.88[AMR][1000 genomes]
rs60617294	0.88[AMR][1000 genomes]
rs61502349	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6501421	0.91[CHB][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6501422	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.84[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs6501423	0.82[EUR][1000 genomes]
rs6501428	0.88[AMR][1000 genomes]
rs6501429	0.88[AMR][1000 genomes]
rs6501430	0.88[AMR][1000 genomes]
rs7208344	0.88[EUR][1000 genomes]
rs7220423	0.84[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7222535	0.88[AMR][1000 genomes]
rs7224186	1.00[CEU][hapmap];0.91[CHB][hapmap];0.91[CHD][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72841850	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72841851	0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs72841853	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs72841855	0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs8079443	1.00[CEU][hapmap];0.90[CHB][hapmap];0.93[JPT][hapmap];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833523	chr17:66343323-66510461	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66391400-66397600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
2	chr17:66392000-66398000	Enhancers	Fetal Thymus	thymus
3	chr17:66392600-66397600	Enhancers	Thymus	Thymus
4	chr17:66392800-66397200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
5	chr17:66393000-66397200	Enhancers	Primary T helper cells PMA-I stimulated	--
6	chr17:66393600-66398400	Weak transcription	Right Atrium	heart
7	chr17:66394200-66397200	Enhancers	Primary T helper naive cells fromperipheralblood	blood
8	chr17:66394400-66397400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
9	chr17:66394400-66397600	Enhancers	HepG2	liver
10	chr17:66394400-66397800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr17:66394800-66397200	Enhancers	Primary T regulatory cells fromperipheralblood	blood
12	chr17:66394800-66397400	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr17:66394800-66397800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr17:66395000-66397600	Enhancers	Fetal Muscle Trunk	muscle
15	chr17:66395200-66398000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr17:66395200-66401800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr17:66395200-66416000	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr17:66395400-66397400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
19	chr17:66395400-66399600	Weak transcription	Brain Anterior Caudate	brain
20	chr17:66395400-66415800	Weak transcription	Right Ventricle	heart
21	chr17:66395600-66409800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
22	chr17:66395600-66410000	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr17:66396000-66399200	Weak transcription	Adipose Nuclei	Adipose
24	chr17:66396000-66401000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr17:66396200-66397200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
26	chr17:66396200-66400200	Weak transcription	Stomach Smooth Muscle	stomach
27	chr17:66396400-66397600	Weak transcription	Placenta	Placenta
28	chr17:66396400-66399400	Weak transcription	Psoas Muscle	Psoas
29	chr17:66396600-66397200	Enhancers	NHDF-Ad	bronchial
30	chr17:66396600-66399200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr17:66396800-66397200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr17:66396800-66398000	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
33	chr17:66396800-66399400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr17:66396800-66409800	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr17:66397000-66397400	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr17:66397000-66399000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr17:66397000-66401000	Weak transcription	Dnd41	blood
38	chr17:66397000-66401600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
39	chr17:66397000-66402200	Weak transcription	Primary T killer memory cells from peripheral blood	blood

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