Variant report

Variant	rs7217587
Chromosome Location	chr17:59891768-59891769
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:13)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:13 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr17:59889894..59892041-chr2:101925111..101926799,2	MCF-7	breast:
2	chr17:59777669..59780570-chr17:59890560..59893186,2	MCF-7	breast:
3	chr17:59890049..59891797-chr3:75078865..75080866,2	MCF-7	breast:
4	chr17:59887264..59888905-chr17:59890851..59894921,3	K562	blood:
5	chr1:107344425..107347315-chr17:59890668..59892934,2	MCF-7	breast:
6	chr17:59475570..59477970-chr17:59890311..59892461,2	MCF-7	breast:
7	chr17:59655980..59658048-chr17:59890809..59893274,2	MCF-7	breast:
8	chr1:107367739..107369613-chr17:59890646..59892172,2	MCF-7	breast:
9	chr17:59890439..59893207-chr6:64345789..64347919,2	MCF-7	breast:
10	chr17:59890842..59893130-chr17:59894180..59895735,2	K562	blood:
11	chr17:59722327..59722830-chr17:59891396..59892068,2	MCF-7	breast:
12	chr17:59890246..59897512-chr17:59906301..59911865,9	MCF-7	breast:
13	chr17:57915238..57918105-chr17:59890802..59892830,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000267131	Chromatin interaction
ENSG00000118482	Chromatin interaction
ENSG00000264857	Chromatin interaction
ENSG00000163162	Chromatin interaction
ENSG00000233449	Chromatin interaction
ENSG00000121068	Chromatin interaction
ENSG00000062716	Chromatin interaction
ENSG00000267280	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs9909731	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378293	chr17:59744117-60124899	ZNF genes & repeats Strong transcription Weak transcription Flanking Active TSS Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	175 gene(s)	inside rSNPs	diseases
2	nsv908673	chr17:59767501-59926645	Weak transcription ZNF genes & repeats Genic enhancers Strong transcription Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	94 gene(s)	inside rSNPs	diseases
3	nsv908674	chr17:59800827-59899790	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases
4	nsv575841	chr17:59812748-59914681	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	59 gene(s)	inside rSNPs	diseases
5	nsv575842	chr17:59812748-59927307	Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Enhancers Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	70 gene(s)	inside rSNPs	diseases
6	nsv908675	chr17:59835864-59937286	Enhancers Strong transcription Weak transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	67 gene(s)	inside rSNPs	diseases
7	esv1794309	chr17:59861640-59907952	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers	TF binding region Chromatin interactive region	32 gene(s)	inside rSNPs	diseases
8	esv1827960	chr17:59869069-59897455	Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region Chromatin interactive region	27 gene(s)	inside rSNPs	diseases
9	nsv575843	chr17:59869081-59935723	Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	55 gene(s)	inside rSNPs	diseases
10	nsv916786	chr17:59890834-60103687	Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	116 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:59825800-59898400	Weak transcription	Thymus	Thymus
2	chr17:59848800-59911200	Weak transcription	HUVEC	blood vessel
3	chr17:59851200-59902600	Weak transcription	Fetal Stomach	stomach
4	chr17:59852600-59898000	Weak transcription	Fetal Intestine Small	intestine
5	chr17:59863600-59925000	Weak transcription	Sigmoid Colon	Sigmoid Colon
6	chr17:59869200-59898200	Weak transcription	Fetal Muscle Leg	muscle
7	chr17:59870400-59933400	Weak transcription	Fetal Intestine Large	intestine
8	chr17:59873200-59905000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
9	chr17:59874400-59910600	Weak transcription	Hela-S3	cervix
10	chr17:59879400-59898000	Weak transcription	Fetal Thymus	thymus
11	chr17:59879600-59893400	Weak transcription	HepG2	liver
12	chr17:59881000-59898400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
13	chr17:59883600-59896800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
14	chr17:59883600-59898400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
15	chr17:59883800-59893600	Weak transcription	GM12878-XiMat	blood
16	chr17:59883800-59898400	Weak transcription	A549	lung
17	chr17:59884200-59933200	Weak transcription	K562	blood
18	chr17:59884400-59898000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr17:59886200-59893400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr17:59887400-59901600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
21	chr17:59887600-59893000	Weak transcription	Primary hematopoietic stem cells	blood
22	chr17:59887600-59893400	Weak transcription	HUES6 Cell Line	embryonic stem cell
23	chr17:59887600-59893400	Weak transcription	HMEC	breast
24	chr17:59887600-59893600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
25	chr17:59887600-59898200	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr17:59887600-59898400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
27	chr17:59887600-59899800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
28	chr17:59887600-59905200	Weak transcription	Fetal Lung	lung
29	chr17:59887800-59898000	Weak transcription	Primary neutrophils fromperipheralblood	blood
30	chr17:59887800-59911000	Weak transcription	NH-A	brain
31	chr17:59888000-59893800	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr17:59888000-59898400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr17:59888000-59898400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
34	chr17:59888000-59910400	Weak transcription	NHEK	skin
35	chr17:59888000-59911000	Weak transcription	NHLF	lung
36	chr17:59888000-59911400	Weak transcription	HSMM	muscle
37	chr17:59889000-59898400	Weak transcription	H1 Cell Line	embryonic stem cell
38	chr17:59889200-59897200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
39	chr17:59889200-59898000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
40	chr17:59889200-59898000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
41	chr17:59889400-59898400	Weak transcription	HUES64 Cell Line	embryonic stem cell
42	chr17:59889600-59898600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
43	chr17:59890400-59893200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr17:59890600-59893200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
45	chr17:59890600-59893400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
46	chr17:59890600-59895800	Strong transcription	Dnd41	blood
47	chr17:59890600-59897600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
48	chr17:59890800-59892200	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
49	chr17:59890800-59893600	Weak transcription	Osteobl	bone
50	chr17:59891000-59897800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin

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