Variant report

Variant	rs7218496
Chromosome Location	chr17:19477224-19477225
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs7222765	1.00[AMR][1000 genomes]
rs7222948	1.00[AMR][1000 genomes]
rs9900244	1.00[AMR][1000 genomes]
rs9903610	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428337	chr17:19340045-19585774	Bivalent Enhancer Enhancers Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
2	nsv482827	chr17:19456848-19645771	Strong transcription Enhancers Weak transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent/Poised TSS Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases
3	nsv1061408	chr17:19458185-19613357	Strong transcription Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	37 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:19457000-19483000	Weak transcription	Psoas Muscle	Psoas
2	chr17:19459200-19482000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
3	chr17:19464000-19483800	Weak transcription	A549	lung
4	chr17:19468200-19478000	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
5	chr17:19471200-19482400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr17:19471200-19482800	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr17:19472400-19480000	Enhancers	Primary neutrophils fromperipheralblood	blood
8	chr17:19473800-19480000	Weak transcription	Skeletal Muscle Female	skeletal muscle
9	chr17:19474200-19479000	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr17:19476600-19477400	Weak transcription	Liver	Liver
11	chr17:19476600-19477600	Weak transcription	Rectal Smooth Muscle	rectum
12	chr17:19476600-19477800	Strong transcription	HepG2	liver
13	chr17:19476600-19479200	Weak transcription	HUES6 Cell Line	embryonic stem cell
14	chr17:19476600-19482800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
15	chr17:19476800-19477400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr17:19477200-19482000	Weak transcription	Colon Smooth Muscle	Colon

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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