Variant report

Variant	rs722011
Chromosome Location	chr7:140557138-140557139
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr7:140555946..140559478-chr7:140574386..140576522,3	MCF-7	breast:
2	chr7:140555537..140558723-chr7:140560485..140562343,3	K562	blood:
3	chr7:140554945..140557362-chr7:140625940..140628286,2	K562	blood:
4	chr7:140549094..140553988-chr7:140556744..140560240,4	K562	blood:
5	chr7:140555134..140561473-chr7:140561764..140565765,7	K562	blood:

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10488098	1.00[CHB][hapmap]
rs1476868	1.00[CHB][hapmap]
rs17622717	1.00[CHB][hapmap]
rs17623204	1.00[CHB][hapmap]
rs17695341	1.00[CHB][hapmap]
rs17695623	1.00[CHB][hapmap]
rs17695707	1.00[CHB][hapmap]
rs17695935	1.00[CHB][hapmap]
rs17695995	1.00[CHB][hapmap]
rs1968140	0.85[CHB][hapmap]
rs2075046	1.00[CHB][hapmap]
rs2930322	0.86[CHB][hapmap]
rs59315265	0.89[ASN][1000 genomes]
rs60187684	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7810757	0.85[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3351231	chr7:140390303-140588539	Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv831158	chr7:140392222-140602315	Flanking Active TSS Weak transcription Enhancers Strong transcription Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
3	nsv518139	chr7:140512661-140622355	Enhancers Weak transcription Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
4	nsv1024264	chr7:140539039-140576522	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
5	nsv1027576	chr7:140539039-140576935	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
6	nsv1030989	chr7:140547011-140569821	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a
7	nsv1018200	chr7:140547011-140576522	Enhancers Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
8	nsv1022502	chr7:140547011-140576935	Enhancers Weak transcription Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers	Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:72 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:140475000-140580200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr7:140479600-140559000	Weak transcription	Skeletal Muscle Male	skeletal muscle
3	chr7:140511000-140563400	Weak transcription	Sigmoid Colon	Sigmoid Colon
4	chr7:140524400-140567800	Weak transcription	Rectal Smooth Muscle	rectum
5	chr7:140525200-140567400	Weak transcription	Right Ventricle	heart
6	chr7:140525600-140557400	Weak transcription	Brain Inferior Temporal Lobe	brain
7	chr7:140527600-140573200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr7:140528600-140563400	Weak transcription	Esophagus	oesophagus
9	chr7:140529600-140558000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
10	chr7:140530400-140564800	Weak transcription	Aorta	Aorta
11	chr7:140530600-140573200	Weak transcription	Gastric	stomach
12	chr7:140531000-140558400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr7:140533600-140561600	Weak transcription	Small Intestine	intestine
14	chr7:140534600-140567600	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
15	chr7:140534600-140570200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
16	chr7:140541400-140558200	Weak transcription	Colon Smooth Muscle	Colon
17	chr7:140546000-140567600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
18	chr7:140546600-140559000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
19	chr7:140546600-140563200	Weak transcription	K562	blood
20	chr7:140546600-140567200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr7:140546800-140557800	Weak transcription	HUES48 Cell Line	embryonic stem cell
22	chr7:140546800-140561200	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr7:140546800-140561400	Weak transcription	Duodenum Smooth Muscle	Duodenum
24	chr7:140546800-140561800	Weak transcription	GM12878-XiMat	blood
25	chr7:140547000-140561000	Weak transcription	Ovary	ovary
26	chr7:140547000-140564600	Weak transcription	Fetal Muscle Trunk	muscle
27	chr7:140547000-140573200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr7:140547200-140567600	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr7:140547200-140567600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
30	chr7:140547200-140573200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr7:140547200-140573400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
32	chr7:140547200-140582400	Weak transcription	Fetal Stomach	stomach
33	chr7:140547400-140563400	Weak transcription	Fetal Intestine Small	intestine
34	chr7:140547400-140572400	Weak transcription	Fetal Muscle Leg	muscle
35	chr7:140547600-140563400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
36	chr7:140547800-140563400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr7:140547800-140567600	Weak transcription	Thymus	Thymus
38	chr7:140548000-140564600	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
39	chr7:140548200-140563600	Weak transcription	Primary hematopoietic stem cells	blood
40	chr7:140548200-140576400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
41	chr7:140549000-140563200	Weak transcription	Primary T cells from cord blood	blood
42	chr7:140549000-140564000	Weak transcription	Fetal Brain Female	brain
43	chr7:140549000-140567600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
44	chr7:140549000-140567600	Weak transcription	Primary B cells from peripheral blood	blood
45	chr7:140549000-140567600	Weak transcription	Liver	Liver
46	chr7:140549000-140594400	Weak transcription	Fetal Thymus	thymus
47	chr7:140549200-140559800	Weak transcription	Primary T helper cells PMA-I stimulated	--
48	chr7:140549200-140563800	Weak transcription	Dnd41	blood
49	chr7:140549200-140567600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
50	chr7:140549200-140569000	Weak transcription	Fetal Intestine Large	intestine

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