Variant report

Variant	rs7225411
Chromosome Location	chr17:38620130-38620131
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr17:38618819..38620675-chr17:38632063..38634752,3	K562	blood:
2	chr17:38619664..38621845-chr17:38716492..38718933,2	MCF-7	breast:
3	chr17:38611458..38614070-chr17:38618853..38620939,2	K562	blood:
4	chr17:38617896..38620878-chr17:38621784..38624449,3	K562	blood:
5	chr17:38617849..38619385-chr17:38619757..38622445,2	MCF-7	breast:
6	chr17:38615734..38617592-chr17:38618155..38620536,2	K562	blood:

Variant related genes	Relation type
ENSG00000126353	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs12951693	0.81[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs60061677	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833445	chr17:38466474-38637969	Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:38614000-38621000	Enhancers	Ovary	ovary
2	chr17:38614000-38623400	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr17:38614200-38629200	Weak transcription	Rectal Mucosa Donor 31	rectum
4	chr17:38614400-38620200	Enhancers	Placenta	Placenta
5	chr17:38614600-38620600	Enhancers	HUES6 Cell Line	embryonic stem cell
6	chr17:38614800-38620400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr17:38615000-38620800	Enhancers	Fetal Muscle Trunk	muscle
8	chr17:38615000-38620800	Enhancers	Fetal Muscle Leg	muscle
9	chr17:38615400-38620200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr17:38615400-38620600	Enhancers	Adipose Nuclei	Adipose
11	chr17:38615400-38621400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr17:38615400-38624600	Weak transcription	HSMM	muscle
13	chr17:38615600-38620600	Enhancers	Fetal Lung	lung
14	chr17:38616600-38621000	Enhancers	Fetal Stomach	stomach
15	chr17:38616800-38620200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr17:38618000-38620600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr17:38618000-38620600	Weak transcription	Fetal Kidney	kidney
18	chr17:38618000-38621600	Enhancers	H1 Cell Line	embryonic stem cell
19	chr17:38618000-38622600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr17:38618200-38620600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr17:38618400-38620600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
22	chr17:38618400-38620600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
23	chr17:38618400-38620600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr17:38618400-38621000	Enhancers	ES-I3 Cell Line	embryonic stem cell
25	chr17:38618600-38620600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr17:38618800-38620200	Enhancers	iPS-20b Cell Line	embryonic stem cell
27	chr17:38618800-38621200	Enhancers	iPS-15b Cell Line	embryonic stem cell
28	chr17:38619000-38620400	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr17:38619000-38627200	Weak transcription	Spleen	Spleen
30	chr17:38619200-38621000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr17:38619200-38621200	Enhancers	A549	lung
32	chr17:38619200-38627200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
33	chr17:38619200-38632000	Weak transcription	Right Atrium	heart
34	chr17:38619600-38620400	Bivalent Enhancer	HepG2	liver
35	chr17:38619600-38620600	Weak transcription	Colon Smooth Muscle	Colon
36	chr17:38619600-38621200	Enhancers	Stomach Smooth Muscle	stomach
37	chr17:38619600-38627200	Weak transcription	NH-A	brain
38	chr17:38619600-38627400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr17:38619800-38620200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr17:38619800-38627200	Weak transcription	iPS-18 Cell Line	embryonic stem cell

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