Variant report

Variant	rs7225548
Chromosome Location	chr17:66653764-66653765
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12451545	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12451591	0.81[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12452323	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs17702693	0.92[CHB][hapmap];0.87[JPT][hapmap]
rs3744501	0.83[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4968918	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs55643423	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs7225388	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs9915927	0.82[ASN][1000 genomes]
rs9989460	0.82[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv833524	chr17:66524030-66705194	Enhancers Weak transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
2	nsv521432	chr17:66652594-66660827	Active TSS Enhancers Weak transcription Flanking Active TSS	lncRNA	n/a	inside rSNPs	n/a

No data

Chromatin state (count:14 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr17:66652600-66654400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
2	chr17:66652800-66654000	Enhancers	Ovary	ovary
3	chr17:66652800-66654600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr17:66653000-66653800	Enhancers	Brain Cingulate Gyrus	brain
5	chr17:66653000-66653800	Enhancers	Colon Smooth Muscle	Colon
6	chr17:66653200-66653800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
7	chr17:66653200-66654400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr17:66653200-66654400	Enhancers	NHDF-Ad	bronchial
9	chr17:66653200-66654400	Enhancers	Osteobl	bone
10	chr17:66653200-66654600	Enhancers	HSMM	muscle
11	chr17:66653400-66653800	Enhancers	Brain Hippocampus Middle	brain
12	chr17:66653400-66653800	Flanking Active TSS	HSMMtube	muscle
13	chr17:66653400-66654400	Enhancers	Fetal Stomach	stomach
14	chr17:66653400-66654600	Enhancers	Fetal Kidney	kidney

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links