Variant report

Variant	rs7228785
Chromosome Location	chr18:24358851-24358852
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:24236248..24238343-chr18:24357858..24360427,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000134504	Chromatin interaction

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs11872394	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11875420	0.85[AFR][1000 genomes]
rs1562701	0.92[ASN][1000 genomes]
rs71352699	0.90[EUR][1000 genomes];0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24351800-24360400	Weak transcription	Dnd41	blood
2	chr18:24356600-24359000	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr18:24356600-24359000	Enhancers	HUES6 Cell Line	embryonic stem cell
4	chr18:24356600-24361000	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
5	chr18:24356800-24359200	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr18:24357200-24359000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr18:24357600-24360200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr18:24357800-24359600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
9	chr18:24357800-24360000	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr18:24357800-24360400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr18:24357800-24360400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr18:24358000-24360400	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr18:24358000-24360400	Weak transcription	Primary monocytes fromperipheralblood	blood
14	chr18:24358200-24359400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr18:24358200-24360400	Weak transcription	Monocytes-CD14+_RO01746	blood
16	chr18:24358400-24361200	Enhancers	iPS-18 Cell Line	embryonic stem cell
17	chr18:24358600-24359000	Enhancers	H9 Cell Line	embryonic stem cell
18	chr18:24358600-24359000	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
19	chr18:24358600-24359000	Enhancers	Adipose Nuclei	Adipose
20	chr18:24358600-24360600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
21	chr18:24358800-24360400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
22	chr18:24358800-24361200	Enhancers	HUES64 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links