Variant report

Variant	rs7230487
Chromosome Location	chr18:24337576-24337577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:24334851..24336533-chr18:24336564..24338276,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs56286118	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60167774	1.00[AMR][1000 genomes]
rs7229182	1.00[AMR][1000 genomes]
rs7241492	1.00[AMR][1000 genomes]
rs8095320	1.00[AMR][1000 genomes]
rs8096093	1.00[AMR][1000 genomes]
rs9959066	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2761995	chr18:24214286-24502570	Bivalent Enhancer Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:24333200-24338600	Weak transcription	Monocytes-CD14+_RO01746	blood
2	chr18:24334000-24338800	Enhancers	Liver	Liver
3	chr18:24335200-24337600	Enhancers	Fetal Adrenal Gland	Adrenal Gland
4	chr18:24335400-24337800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr18:24335400-24337800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr18:24335600-24338600	Enhancers	Breast Myoepithelial Primary Cells	Breast
7	chr18:24336000-24339400	Enhancers	Fetal Kidney	kidney
8	chr18:24336200-24338200	Enhancers	Fetal Intestine Small	intestine
9	chr18:24336400-24338000	Enhancers	Duodenum Mucosa	Duodenum
10	chr18:24336400-24338200	Enhancers	Stomach Mucosa	stomach
11	chr18:24336600-24337600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr18:24336600-24338000	Flanking Active TSS	A549	lung
13	chr18:24336600-24338000	Enhancers	HepG2	liver
14	chr18:24336800-24337600	Enhancers	Fetal Lung	lung
15	chr18:24336800-24338000	Enhancers	Brain Anterior Caudate	brain
16	chr18:24336800-24338400	Enhancers	Pancreatic Islets	Pancreatic Islet
17	chr18:24337000-24337600	Enhancers	Fetal Intestine Large	intestine
18	chr18:24337000-24337600	Enhancers	Sigmoid Colon	Sigmoid Colon
19	chr18:24337000-24337800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
20	chr18:24337000-24338000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
21	chr18:24337000-24338000	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr18:24337000-24338200	Enhancers	Rectal Mucosa Donor 29	rectum
23	chr18:24337000-24338200	Enhancers	HMEC	breast
24	chr18:24337000-24338200	Enhancers	NHEK	skin
25	chr18:24337200-24337600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
26	chr18:24337200-24337800	Enhancers	Brain Hippocampus Middle	brain
27	chr18:24337200-24338000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr18:24337200-24338000	Enhancers	Brain Germinal Matrix	brain
29	chr18:24337400-24337600	Enhancers	Rectal Mucosa Donor 31	rectum
30	chr18:24337400-24337800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr18:24337400-24338200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr18:24337400-24338400	Enhancers	Lung	lung
33	chr18:24337400-24339000	Enhancers	Pancreas	Pancrea

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