Variant report

Variant	rs7232709
Chromosome Location	chr18:44200887-44200888
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs12458980	0.97[ASN][1000 genomes]
rs328123	0.88[ASN][1000 genomes]
rs328124	0.88[ASN][1000 genomes]
rs328130	0.88[ASN][1000 genomes]
rs644468	0.95[JPT][hapmap]
rs658951	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv428355	chr18:44160181-44406285	Weak transcription Bivalent Enhancer Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:44199200-44203200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr18:44199200-44203200	Weak transcription	HMEC	breast
3	chr18:44199800-44201000	Enhancers	Lung	lung
4	chr18:44199800-44201400	Enhancers	Fetal Brain Male	brain
5	chr18:44199800-44202600	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
6	chr18:44200200-44201200	Enhancers	Spleen	Spleen
7	chr18:44200800-44203200	Enhancers	Dnd41	blood
8	chr18:44200800-44204800	Enhancers	Primary T killer naive cells fromperipheralblood	blood

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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