Variant report

Variant	rs723455
Chromosome Location	chr8:116089099-116089100
allele	C/G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr8:115857407..115858047-chr8:116088791..116089518,2	MCF-7	breast:
2	chr8:115858972..115859777-chr8:116088522..116089323,3	MCF-7	breast:
3	chr8:115858454..115859582-chr8:116088622..116089592,9	MCF-7	breast:

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs2036014	0.93[AMR][1000 genomes];1.00[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs73365648	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:13 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv611976	chr8:115261134-116223865	Weak transcription Enhancers Active TSS Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
2	nsv1018280	chr8:115307838-116189192	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv539726	chr8:115307838-116189192	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv891373	chr8:115351857-116295809	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv891377	chr8:115395451-116110725	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
6	nsv891395	chr8:115642536-116222842	Enhancers Flanking Active TSS Genic enhancers Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv891397	chr8:115810385-116129344	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region	n/a	inside rSNPs	diseases
8	nsv891399	chr8:116037798-116295809	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3'	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1025666	chr8:116051254-116149507	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
10	nsv1025482	chr8:116051374-116149507	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
11	nsv1029474	chr8:116054292-116148965	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
12	nsv1032185	chr8:116054292-116149507	Enhancers Active TSS Flanking Active TSS Weak transcription Genic enhancers ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
13	nsv1016140	chr8:116054292-116154006	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:42 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr8:116085600-116089600	Enhancers	Dnd41	blood
2	chr8:116088400-116089200	Enhancers	NH-A	brain
3	chr8:116088400-116089400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr8:116088400-116089400	Enhancers	Muscle Satellite Cultured Cells	--
5	chr8:116088400-116089400	Enhancers	Fetal Heart	heart
6	chr8:116088400-116089400	Enhancers	Fetal Stomach	stomach
7	chr8:116088600-116089200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
8	chr8:116088600-116089200	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr8:116088600-116089200	Active TSS	Brain Hippocampus Middle	brain
10	chr8:116088600-116089200	Enhancers	NHLF	lung
11	chr8:116088600-116089600	Enhancers	Colon Smooth Muscle	Colon
12	chr8:116088800-116089200	Active TSS	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr8:116088800-116089200	Flanking Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr8:116088800-116089200	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr8:116088800-116089200	Enhancers	Primary B cells from peripheral blood	blood
16	chr8:116088800-116089200	Enhancers	Primary T cells fromperipheralblood	blood
17	chr8:116088800-116089200	Enhancers	Primary hematopoietic stem cells	blood
18	chr8:116088800-116089200	Enhancers	Primary T helper cells PMA-I stimulated	--
19	chr8:116088800-116089200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr8:116088800-116089200	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
21	chr8:116088800-116089200	Flanking Active TSS	Foreskin Keratinocyte Primary Cells skin02	Skin
22	chr8:116088800-116089200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr8:116088800-116089200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
24	chr8:116088800-116089200	Flanking Active TSS	Brain Angular Gyrus	brain
25	chr8:116088800-116089200	Enhancers	Brain Cingulate Gyrus	brain
26	chr8:116088800-116089200	Active TSS	Brain Germinal Matrix	brain
27	chr8:116088800-116089200	Flanking Active TSS	Duodenum Smooth Muscle	Duodenum
28	chr8:116088800-116089200	Flanking Active TSS	Fetal Brain Female	brain
29	chr8:116088800-116089200	Enhancers	Fetal Kidney	kidney
30	chr8:116088800-116089200	Active TSS	Pancreatic Islets	Pancreatic Islet
31	chr8:116088800-116089200	Enhancers	Small Intestine	intestine
32	chr8:116088800-116089200	Active TSS	Stomach Smooth Muscle	stomach
33	chr8:116088800-116089200	Enhancers	GM12878-XiMat	blood
34	chr8:116088800-116089200	Flanking Active TSS	Hela-S3	cervix
35	chr8:116088800-116089400	Enhancers	HUES6 Cell Line	embryonic stem cell
36	chr8:116088800-116089400	Enhancers	HUES64 Cell Line	embryonic stem cell
37	chr8:116088800-116089400	Enhancers	Liver	Liver
38	chr8:116089000-116089200	Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
39	chr8:116089000-116089200	Active TSS	Brain Inferior Temporal Lobe	brain
40	chr8:116089000-116089200	Active TSS	Skeletal Muscle Male	skeletal muscle
41	chr8:116089000-116089200	Active TSS	A549	lung
42	chr8:116089000-116093000	Weak transcription	Rectal Smooth Muscle	rectum

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