Variant report

Variant	rs7234732
Chromosome Location	chr18:43904903-43904904
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:69)
CpG islands
(count:0)
Chromatin interactive
region (count:0)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:69 , 50 per page) page: 1 2

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	JUND	chr18:43904559-43904968	K562	blood:	n/a	n/a
2	HCFC1	chr18:43904124-43905345	Hela-S3	cervix:	n/a	n/a
3	YY1	chr18:43904685-43904958	GM12892	blood:	n/a	n/a
4	FOS	chr18:43904583-43904933	MCF10A-Er-Src	breast:	n/a	n/a
5	SIX5	chr18:43904603-43904943	K562	blood:	n/a	n/a
6	ELK4	chr18:43904388-43904916	HEK293	kidney:	n/a	n/a
7	MYC	chr18:43904561-43904916	K562	blood:	n/a	n/a
8	SRF	chr18:43904415-43904981	ECC-1	luminal epithelium:	n/a	n/a
9	POLR2A	chr18:43904403-43904972	Hela-S3	cervix:	n/a	n/a
10	YY1	chr18:43904631-43904950	GM12878	blood:	n/a	n/a
11	MYC	chr18:43904584-43904953	K562	blood:	n/a	n/a
12	ZNF143	chr18:43904570-43905000	GM12878	blood:	n/a	n/a
13	MYC	chr18:43904607-43904946	MCF10A-Er-Src	breast:	n/a	n/a
14	USF2	chr18:43904087-43905051	Hela-S3	cervix:	n/a	n/a
15	YY1	chr18:43904553-43905030	SK-N-SH	brain:	n/a	n/a
16	ZNF143	chr18:43904583-43904984	H1-hESC	embryonic stem cell:	n/a	n/a
17	USF1	chr18:43904289-43904969	H1-hESC	embryonic stem cell:	n/a	n/a
18	ELF1	chr18:43904547-43904910	MCF-7	breast:	n/a	chr18:43904714-43904727
19	YY1	chr18:43904462-43905059	ECC-1	luminal epithelium:	n/a	n/a
20	NFYB	chr18:43904560-43904976	Hela-S3	cervix:	n/a	n/a
21	MYC	chr18:43904355-43904965	NB4	blood:	n/a	chr18:43904400-43904409
22	SRF	chr18:43904454-43905012	MCF-7	breast:	n/a	n/a
23	YY1	chr18:43904547-43904964	H1-hESC	embryonic stem cell:	n/a	n/a
24	MAX	chr18:43904726-43904926	H1-hESC	embryonic stem cell:	n/a	n/a
25	ELF1	chr18:43904359-43905057	HCT-116	colon:	n/a	chr18:43904714-43904727
26	MAX	chr18:43904236-43905037	NB4	blood:	n/a	chr18:43904400-43904409
27	YY1	chr18:43904666-43904904	GM12892	blood:	n/a	n/a
28	ARID3A	chr18:43904631-43904928	K562	blood:	n/a	n/a
29	ELK1	chr18:43904510-43904933	Hela-S3	cervix:	n/a	n/a
30	YY1	chr18:43904478-43904989	H1-hESC	embryonic stem cell:	n/a	n/a
31	CEBPB	chr18:43904318-43904910	Hela-S3	cervix:	n/a	n/a
32	SIX5	chr18:43904588-43904948	H1-hESC	embryonic stem cell:	n/a	n/a
33	USF1	chr18:43904583-43904944	SK-N-SH_RA	brain:	n/a	n/a
34	NFYA	chr18:43904589-43904977	Hela-S3	cervix:	n/a	n/a
35	ZNF143	chr18:43904547-43905012	K562	blood:	n/a	n/a
36	SPI1	chr18:43904010-43904992	HL-60	blood:	n/a	chr18:43904109-43904122 chr18:43904239-43904248
37	USF1	chr18:43904513-43905032	HCT-116	colon:	n/a	n/a
38	YY1	chr18:43904660-43904919	GM12891	blood:	n/a	n/a
39	USF1	chr18:43904507-43904938	SK-N-SH	brain:	n/a	n/a
40	YY1	chr18:43904457-43905041	ECC-1	luminal epithelium:	n/a	n/a
41	YY1	chr18:43904598-43904957	GM12878	blood:	n/a	n/a
42	SIX5	chr18:43904591-43904964	GM12878	blood:	n/a	n/a
43	MYC	chr18:43904470-43905078	MCF10A-Er-Src	breast:	n/a	n/a
44	SIX5	chr18:43904566-43904995	H1-hESC	embryonic stem cell:	n/a	n/a
45	YY1	chr18:43904614-43904957	HCT-116	colon:	n/a	n/a
46	ATF1	chr18:43904595-43904947	K562	blood:	n/a	n/a
47	FOS	chr18:43904508-43904947	MCF10A-Er-Src	breast:	n/a	n/a
48	YY1	chr18:43904523-43904970	SK-N-SH_RA	brain:	n/a	n/a
49	USF1	chr18:43904440-43905118	HCT-116	colon:	n/a	n/a
50	USF1	chr18:43904197-43904998	ECC-1	luminal epithelium:	n/a	n/a

No data

Variant related genes	Relation type
RNF165	TF binding region

rs_ID	r²[population]
rs11876540	1.00[MEX][hapmap]
rs16978560	1.00[MEX][hapmap]
rs3844039	1.00[MEX][hapmap]
rs7236199	0.85[LWK][hapmap];0.82[YRI][hapmap]

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:43899800-43905000	Enhancers	HMEC	breast
2	chr18:43901200-43905600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
3	chr18:43902600-43905400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
4	chr18:43902800-43905000	Enhancers	NHEK	skin
5	chr18:43902800-43905800	Weak transcription	Esophagus	oesophagus
6	chr18:43902800-43906200	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr18:43903200-43909800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr18:43903200-43909800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr18:43903600-43905000	Enhancers	Primary monocytes fromperipheralblood	blood
10	chr18:43904200-43905000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
11	chr18:43904200-43905000	Enhancers	Lung	lung
12	chr18:43904600-43905400	Enhancers	Hela-S3	cervix
13	chr18:43904600-43905600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr18:43904800-43905000	Enhancers	Dnd41	blood
15	chr18:43904800-43905000	Enhancers	Monocytes-CD14+_RO01746	blood
16	chr18:43904800-43905800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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