Variant report

Variant	rs7235110
Chromosome Location	chr18:8624042-8624043
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr18:8617866..8620402-chr18:8622519..8624289,2	MCF-7	breast:
2	chr18:8611811..8615415-chr18:8621524..8625470,5	MCF-7	breast:
3	chr18:8618906..8620726-chr18:8622876..8625052,2	K562	blood:
4	chr18:8612004..8614198-chr18:8622613..8624128,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs11876907	0.96[EUR][1000 genomes]
rs1250161	0.98[EUR][1000 genomes]
rs57834182	0.81[AFR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv458018	chr18:8110805-8645907	Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
2	nsv576426	chr18:8110805-8645907	Weak transcription ZNF genes & repeats Strong transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	23 gene(s)	inside rSNPs	diseases
3	nsv2200	chr18:8618182-8663130	Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region miRNA target site	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:8610600-8634400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr18:8612600-8625400	Weak transcription	Aorta	Aorta
3	chr18:8612600-8625600	Weak transcription	Rectal Mucosa Donor 29	rectum
4	chr18:8615600-8625600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr18:8616400-8625200	Weak transcription	Brain Germinal Matrix	brain
6	chr18:8616400-8625600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr18:8616600-8625400	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr18:8616600-8625400	Weak transcription	Fetal Stomach	stomach
9	chr18:8616600-8634600	Weak transcription	NH-A	brain
10	chr18:8621000-8631200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
11	chr18:8621200-8624600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr18:8621200-8625400	Weak transcription	Ovary	ovary
13	chr18:8621200-8625400	Weak transcription	HUVEC	blood vessel
14	chr18:8621600-8633400	Weak transcription	Fetal Brain Male	brain
15	chr18:8621800-8625000	Weak transcription	Fetal Intestine Large	intestine
16	chr18:8621800-8625600	Weak transcription	Thymus	Thymus
17	chr18:8621800-8633000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr18:8622000-8625400	Weak transcription	Fetal Brain Female	brain
19	chr18:8622400-8625400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr18:8622600-8624200	Enhancers	Primary B cells from peripheral blood	blood
21	chr18:8622600-8624200	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
22	chr18:8623000-8624200	Enhancers	ES-I3 Cell Line	embryonic stem cell
23	chr18:8623000-8624200	Enhancers	Primary hematopoietic stem cells short term culture	blood
24	chr18:8623200-8624200	Flanking Active TSS	iPS-18 Cell Line	embryonic stem cell
25	chr18:8623200-8624200	Genic enhancers	Primary T cells fromperipheralblood	blood
26	chr18:8623200-8624600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
27	chr18:8623400-8624200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
28	chr18:8623400-8624200	Enhancers	H9 Cell Line	embryonic stem cell
29	chr18:8623400-8624200	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
30	chr18:8623400-8624200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
31	chr18:8623400-8624200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
32	chr18:8623400-8624200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr18:8623400-8624200	Genic enhancers	Breast Myoepithelial Primary Cells	Breast
34	chr18:8623400-8624200	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
35	chr18:8623400-8624200	Enhancers	Primary neutrophils fromperipheralblood	blood
36	chr18:8623400-8624200	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
37	chr18:8623400-8624200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
38	chr18:8623400-8624200	Enhancers	Primary T killer naive cells fromperipheralblood	blood
39	chr18:8623400-8624200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
40	chr18:8623400-8624200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
41	chr18:8623400-8624200	Enhancers	Primary mononuclear cells fromperipheralblood	Blood
42	chr18:8623400-8624200	Flanking Active TSS	Adipose Nuclei	Adipose
43	chr18:8623400-8624200	Enhancers	Liver	Liver
44	chr18:8623400-8624200	Enhancers	Brain Inferior Temporal Lobe	brain
45	chr18:8623400-8624200	Enhancers	Colon Smooth Muscle	Colon
46	chr18:8623400-8624200	Flanking Active TSS	Duodenum Mucosa	Duodenum
47	chr18:8623400-8624200	Enhancers	Fetal Muscle Leg	muscle
48	chr18:8623400-8624200	Enhancers	Placenta	Placenta
49	chr18:8623400-8624200	Flanking Active TSS	Right Atrium	heart
50	chr18:8623400-8624200	Enhancers	Sigmoid Colon	Sigmoid Colon

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